Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq39735 224 3e-54 seq32757 163 8e-36 seq455362 98.7 3e-16 >seq39735 Length=4112 Score = 224 bits (248), Expect = 3e-54 Identities = 259/346 (75%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 19680 TATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGG 19738 ||| |||| || | |||| ||| |||| | ||||| | | |||||| |||| ||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGG 1698 Query 19739 GAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATT 19798 || ||| ||| ||||||||||| || |||||||||||||| ||||| ||| | ||||| Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758 Query 19799 CCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATT 19858 |||||| || ||||| ||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818 Query 19859 CGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGA 19918 || || || || ||| ||||||||| || |||||| || || | |||| ||| Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGA 1878 Query 19919 AACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATA 19978 ||| || || ||| ||| || | || || | ||||| ||||| ||||| || || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 19979 TAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAA 20024 |||||| || || || || || || ||||| ||||||| || ||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 163 bits (180), Expect = 8e-36 Identities = 238/333 (71%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| | || || || || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502 || || || ||| | |||||||||||||||||||| || || | | || | || Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562 || ||||| |||||||||| || || |||||||| | || | ||||| ||||||||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC-AGC-ATACG 19620 ||||| || || ||| | || |||| | ||||||||| | || ||||| || ||| | Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 19621 CTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCAT 19680 ||| | |||||||||| || | | | || ||| | || ||||| || |||| Sbjct 3941 --GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998 Query 19681 ATACAGCACCACTATCAGCAGCTCTTGCTGTGT 19713 || |||| || | |||| ||| |||| ||| Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGCTACTGCTCTGT 4031 >seq455362 Length=6327 Score = 98.7 bits (108), Expect = 3e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 19317 AACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACT 19376 || || ||||| | || |||||| | || | ||||| ||| ||| | | || ||| Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 814 Query 19377 ACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAG 19436 || ||||| | || || || || ||||| || |||||||| ||||| || ||||| Sbjct 813 TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAA 754 Query 19437 CCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGC 19483 || ||||| || || ||| | |||||||||||||||||||| || || Sbjct 753 CCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143367915574296