Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 224 3e-54
seq32757 163 8e-36
seq455362 98.7 3e-16
>seq39735
Length=4112
Score = 224 bits (248), Expect = 3e-54
Identities = 259/346 (75%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 19680 TATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGG 19738
||| |||| || | |||| ||| |||| | ||||| | | |||||| |||| |||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGG 1698
Query 19739 GAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATT 19798
|| ||| ||| ||||||||||| || |||||||||||||| ||||| ||| | |||||
Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758
Query 19799 CCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATT 19858
|||||| || ||||| ||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818
Query 19859 CGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGA 19918
|| || || || ||| ||||||||| || |||||| || || | |||| |||
Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGA 1878
Query 19919 AACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATA 19978
||| || || ||| ||| || | || || | ||||| ||||| ||||| || ||
Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938
Query 19979 TAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAA 20024
|||||| || || || || || || ||||| ||||||| || |||
Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 163 bits (180), Expect = 8e-36
Identities = 238/333 (71%), Gaps = 4/333 (1%)
Strand=Plus/Plus
Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442
||||| | || || || || ||||| || |||||||| ||||| || ||||| || |||
Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760
Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502
|| || || ||| | |||||||||||||||||||| || || | | || | ||
Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820
Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562
|| ||||| |||||||||| || || |||||||| | || | ||||| |||||||||
Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880
Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC-AGC-ATACG 19620
||||| || || ||| | || |||| | ||||||||| | || ||||| || ||| |
Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940
Query 19621 CTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCAT 19680
||| | |||||||||| || | | | || ||| | || ||||| || ||||
Sbjct 3941 --GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998
Query 19681 ATACAGCACCACTATCAGCAGCTCTTGCTGTGT 19713
|| |||| || | |||| ||| |||| |||
Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGCTACTGCTCTGT 4031
>seq455362
Length=6327
Score = 98.7 bits (108), Expect = 3e-16
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 19317 AACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACT 19376
|| || ||||| | || |||||| | || | ||||| ||| ||| | | || |||
Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 814
Query 19377 ACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAG 19436
|| ||||| | || || || || ||||| || |||||||| ||||| || |||||
Sbjct 813 TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAA 754
Query 19437 CCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGC 19483
|| ||||| || || ||| | |||||||||||||||||||| || ||
Sbjct 753 CCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143367915574296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |