Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 206 4e-48
seq32757 156 7e-33
>seq39735
Length=4112
Score = 206 bits (228), Expect = 4e-48
Identities = 252/344 (73%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 211960 TATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGT 212019
|||||||| ||||| |||| ||| ||| | ||| | | |||||| | ||||| ||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 212020 TCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTC 212079
|| || |||||||||||| |||| || || || || |||||||||||| | ||||||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 212080 CAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTC 212139
||||| || || |||||||||||||||||||| || ||| |||||| || ||| | ||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 212140 GGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAA 212199
|| || | ||||| ||||||||| |||||| | || || ||| | ||| | |||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 212200 ACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATAT 212259
||||| | || || || | ||||||| ||||| ||||| ||||| || |||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 212260 AACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCA 212303
|| ||||| || || ||||| || || || || | ||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983
>seq32757
Length=9777
Score = 156 bits (172), Expect = 7e-33
Identities = 227/321 (71%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 211663 TTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTA 211722
||||| | || ||||| || |||||||| || ||||| || || || |||||||| ||
Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760
Query 211723 GCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 211782
|||| || || | || || ||||| || || || ||||| || | || ||||
Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820
Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842
|| || ||||| ||||| || || || |||||||| || || ||||||| ||| | |||
Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880
Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902
|| ||||| ||||| || | | | | |||||| | | || | | || |||
Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940
Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962
|| | ||||||||||| | |||| | |||||||| |||||||| |||||| |||
Sbjct 3941 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 4000
Query 211963 TCAGCACCTGTATCAGCAGCT 211983
||||| ||||| |||| |||
Sbjct 4001 TCAGCTCCTGTTGCAGCTGCT 4021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 801236423770960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |