Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq620679 107 2e-18 >seq620679 Length=2600 Score = 107 bits (118), Expect = 2e-18 Identities = 378/582 (65%), Gaps = 14/582 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || || || |||| || | ||||| || || || || Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | || |||||||||||||||||||| | ||| || || |||||| Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAG 1872 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTGTCATG 33479 || ||||| || ||| || ||||| | | || ||| | || | | || ||| Sbjct 1873 ATCCCTTCCAC-GCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTC--- 1928 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| || | ||||| | ||||| || || ||||| || || || | ||| Sbjct 1929 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 1988 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||||| | ||| || | ||||| | || || |||| | || || ||||| Sbjct 1989 AAAGAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 2048 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 2049 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 2108 Query 33660 CTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| || || | || | | |||| || | ||| || || || ||||| ||| | Sbjct 2109 CTGGACCTC-CTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGG 2167 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 | || || || | || || | || || | || ||| | || ||||| | | ||| | Sbjct 2168 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGT 2227 Query 33779 --CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || |||| | ||| || || || | ||||| || || ||||| ||||| Sbjct 2228 GGCGCTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTT 2285 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || ||||| | |||||| || || || || ||||| || Sbjct 2286 CTTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618072902912560