Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq51887 93.3 4e-14
seq492976 89.7 4e-13
seq610020 87.8 2e-12
seq62158 87.8 2e-12
seq54597 87.8 2e-12
seq42417 87.8 2e-12
seq467159 86.0 5e-12
seq234213 86.0 5e-12
seq62569 86.0 5e-12
seq30955 86.0 5e-12
>seq51887
Length=16442
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/143 (75%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | |||
Sbjct 8377 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 8318
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| |||| | ||||| ||||| ||||| || || || |||| |||| |||
Sbjct 8317 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 8258
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| |||| || || ||||| ||
Sbjct 8257 AGGCTGAGGGGTGGAACTATGAT 8235
>seq492976
Length=9861
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || ||||| |||| || || | || ||| |||| |||||| | |
Sbjct 9048 ATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCC 8989
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| || ||||| ||||| || ||
Sbjct 8988 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 8929
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || || | || ||| ||||| || || || | | | | | || ||| || |||
Sbjct 8928 CAGAGGCTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAAC 8869
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || || || ||
Sbjct 8868 ATCCAGAAGGAGTCGAC 8852
>seq610020
Length=13068
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/143 (74%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| || |||||||| ||||| ||||| ||||||||||||| | || ||||| | |||
Sbjct 6432 GATAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 6373
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| ||| | | |||||||| || |||||||| || || | || | |||||
Sbjct 6372 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 6313
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| ||||| ||||| ||||| ||
Sbjct 6312 AGGTTGAGGGGAGGAACTATGAT 6290
>seq62158
Length=5977
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || || |||| || ||| |
Sbjct 940 AAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 881
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| |||||||||||| | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct 880 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGAT 821
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || ||| ||||| ||||| || | | | | | | ||| ||
Sbjct 820 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTAC 761
Query 24168 AACATTCAAAAAG 24180
||||| || ||||
Sbjct 760 AACATCCAGAAAG 748
>seq54597
Length=20763
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || || |||| || ||| |
Sbjct 13105 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 13046
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| |||||||||||| | ||||| ||||| ||||| |||||||| ||||| |||
Sbjct 13045 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGAT 12986
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || ||| ||||| ||||| || | | | | | | ||| ||
Sbjct 12985 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTAC 12926
Query 24168 AACATTCAAAAAG 24180
||||| || ||||
Sbjct 12925 AACATCCAGAAAG 12913
>seq42417
Length=17167
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/143 (74%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| || |||||||| |||| |||||||||||| |||||| | ||| |||||| | |||
Sbjct 2807 GATAAGGAAGGCATCACTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 2748
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| |||| | ||||| ||||| ||||| || || || |||| |||| |||
Sbjct 2747 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 2688
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| |||| || || ||||| ||
Sbjct 2687 AGGCTGAGGGGTGGAACTATGAT 2665
>seq467159
Length=2775
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || || | || ||| |||| || ||| || |
Sbjct 1702 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCCTCC 1761
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| || ||||| || || || ||
Sbjct 1762 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1821
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||||||||| ||||| || | | | | || ||| || |||
Sbjct 1822 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACTACAAC 1881
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || ||||| ||
Sbjct 1882 ATACAGAAGGAATCAAC 1898
>seq234213
Length=337
Score = 86.0 bits (94), Expect = 5e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | |||||||| || |||| || || | || ||| |||| || ||| | |
Sbjct 57 ATGCAGATCTTTGTAAAGACCCTAACCGGCAAGACCATCACCCTCGAGGTAGAGAGCTCC 116
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| ||||| ||||| || ||||| ||||| || |||
Sbjct 117 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAA 176
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||||| || || | | ||| ||||| ||||| ||
Sbjct 177 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGA 211
>seq62569
Length=7807
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || || | || ||| |||| || ||| || |
Sbjct 900 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCCTCC 959
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| || ||||| || || || ||
Sbjct 960 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1019
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||||||||| ||||| || | | | | | || ||| || |||
Sbjct 1020 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 1079
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || || || ||
Sbjct 1080 ATCCAGAAGGAGTCGAC 1096
>seq30955
Length=2588
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || || | || ||| |||| || ||| || |
Sbjct 1433 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCCTCC 1374
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| || ||||| || || || ||
Sbjct 1373 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1314
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||||||||| ||||| || | | | | | || ||| || |||
Sbjct 1313 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 1254
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || || || ||
Sbjct 1253 ATCCAGAAGGAGTCGAC 1237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426656035184730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |