Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq39735 215 6e-51 seq32757 172 6e-38 >seq39735 Length=4112 Score = 215 bits (238), Expect = 6e-51 Identities = 257/346 (74%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 166444 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGT 166503 || || || ||||||||||| || | || | ||| || |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 166504 TCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTC 166563 || ||||||| ||||| || || ||| ||| || ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 166564 CAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTC 166623 ||||| |||||||||||||| |||||||| || || ||||| ||||| || |||||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 166624 GGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGA 166682 || || || || ||| || ||||| || | | || || | || | | | || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGA 1878 Query 166683 GACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTA 166742 ||||| |||| ||| ||| || | ||||||| || |||||||| ||||| ||||| Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 166743 CAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAA 166788 || ||||| || ||||||||||| || || || ||||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 172 bits (190), Expect = 6e-38 Identities = 227/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 166156 GCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCT 166215 |||||| | || |||||||| || ||||| ||||| || ||||| || || | || ||| Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 166216 CTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTG 166273 || | || || ||||| || || || ||||| || |||| || || || || || | Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA--GCTATAG 3827 Query 166274 GTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTG 166333 || | ||||| || || || |||||||| || || ||||||||||| | || ||||||| Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887 Query 166334 GTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTG 166393 | |||| |||| | || | |||||| | | || | | ||| |||||||||| Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTG 3947 Query 166394 AATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCAC 166453 | |||||| | || ||| || |||||||| ||||||||| || ||||| || || | Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 166454 CTGTTGCAGCAGC 166466 |||||||||| || Sbjct 4008 CTGTTGCAGCTGC 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562793650673600