Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq620679 143 3e-29 seq83020 111 2e-19 seq59309 96.9 4e-15 seq511665 93.3 5e-14 seq578098 89.7 6e-13 seq518659 87.8 2e-12 seq44391 86.0 7e-12 seq229824 84.2 2e-11 seq42226 84.2 2e-11 seq490538 82.4 8e-11 seq450047 82.4 8e-11 seq415056 82.4 8e-11 seq409374 82.4 8e-11 seq346877 82.4 8e-11 seq335505 82.4 8e-11 >seq620679 Length=2600 Score = 143 bits (158), Expect = 3e-29 Identities = 511/788 (65%), Gaps = 13/788 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACG 92982 |||||||| || || || ||||||||| ||||| ||||| ||||| || | ||| || Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || |||| |||||| | ||| || |||| || |||| || | || |||| Sbjct 1645 CAC-GGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 1703 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT-GTACATTAAGCACGCAAAGT 93101 | || | || | |||| || | || | ||| | | |||||| |||| Sbjct 1704 CTTCACGCG-CTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGGCACGCGAAGT 1762 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || || | ||||| ||||| || |||||||| || ||| || | ||| || | || Sbjct 1763 CGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCA 1822 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220 || || || || ||||||||||| | ||| || || || || || || || |||||| Sbjct 1823 ACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAAGATCCCTTCC 1881 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||| || || ||||| || || || || ||| | | || | | ||||||||| Sbjct 1882 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGA---GCCGTCGATCCATTTC 1938 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG--GT 93338 | ||||| | || |||||| | ||||| | || |||| || ||| || | Sbjct 1939 AGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAGACGG 1998 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 || | ||||||||| ||| ||||| || |||| | || ||||| || || | Sbjct 1999 GATTT--CTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGT 2056 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 ||| ||||| || || || ||||| |||||||| | || |||| || ||| || | Sbjct 2057 GGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGGACCT 2116 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 | | || || | ||||||| || ||| || || ||||| || || || || | Sbjct 2117 CCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGG 2176 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT 93578 | | | || | || || || ||||| | | || | ||||| | | | | Sbjct 2177 CGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCGCTGGT 2236 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 ||| |||||||| || ||| | ||||| ||||| || || || || |||||||| | Sbjct 2237 CTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCT 2296 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 |||| || || | || ||||| || || ||| || || | ||||| | | || | Sbjct 2297 CCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTTGGCCATCAGGA 2356 Query 93699 ACGGCTCT 93706 ||||||| Sbjct 2357 GCGGCTCT 2364 >seq83020 Length=697 Score = 111 bits (122), Expect = 2e-19 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGC 126322 |||||||||||||||||||||||||||| |||||||||| |||| | ||| || ||| | Sbjct 304 AGTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCGTCTGGGGTC 363 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 364 GTGGGTTCGAACCCCACACCTGACA 388 >seq59309 Length=1347 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/104 (82%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 |||||| ||||||||||||||||||| |||||||||| | |||||| | ||| |||| Sbjct 935 AGTCAGTTTGGCCGAGTGGTCTAAGGAGCCAGATTTAGGCTCTGGTCCGAACGG--GCGT 878 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||| || |||||| ||| ||| |||| || || ||||||| Sbjct 877 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTGATTTTTTGT 836 >seq511665 Length=638 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/97 (82%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 217 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 276 Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 ||||||||| || ||||| |||||| || | ||||| Sbjct 277 CGTGGGTTCAAATCCCACTTCTGACATAAATTTTATT 313 >seq578098 Length=5750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 1998 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 1939 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 1938 CGTGGGTTCAAATCCCACTTCTGACA 1913 >seq518659 Length=401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 104 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 161 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 |||||| || |||||| ||| ||| |||| || | ||||||| Sbjct 162 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTCATTTTTTGT 203 >seq44391 Length=8785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 8161 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 8218 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 8219 GGGCGTGGGTTCAAATCCCACTTCTGACA 8247 >seq229824 Length=340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 ||||| |||||| || | ||||| ||||| || |||||||| || ||| || | | Sbjct 259 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGA 200 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaa 93210 || || | || || || || || ||||||||||| | ||| || || || || || || Sbjct 199 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 141 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||||||| || || ||||| || || || || ||| | |||| | | Sbjct 140 GATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGA---GCCGTC 84 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTC 93301 ||||||||| | ||||| | || |||||| Sbjct 83 GATCCATTTCAGGGCCCACTGCGCCTTTTTC 53 >seq42226 Length=2786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1447 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1390 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| ||| |||| || |||||| Sbjct 1389 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTTCATTTTT 1350 >seq490538 Length=823 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 347 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 404 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 ||||||||| || ||||| |||||| || || Sbjct 405 CGTGGGTTCAAATCCCACTTCTGACACATCAT 436 >seq450047 Length=1490 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 682 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 625 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 ||||||||| || ||||| |||||| || || Sbjct 624 CGTGGGTTCAAATCCCACTTCTGACACATCAT 593 >seq415056 Length=2854 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2575 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2518 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGA-ATTTTTGTT 126369 ||| || |||||| ||| | ||| || ||| | || |||||| Sbjct 2517 TTCAAATCCCACAGCTGTC--ATTGTTTTTGCATATCTTTGTT 2477 >seq409374 Length=499 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 221 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 164 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG-GAATTTTTGTT 126369 ||| || |||||| ||| | ||| || ||| ||| |||||| Sbjct 163 TTCAAATCCCACAGCTGTC--ATTGTTTTTGCAAATCTTTGTT 123 >seq346877 Length=2184 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1495 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1552 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 1553 GGGTTCAAATCCCACAGCTGTCAATTT 1579 >seq335505 Length=2387 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1314 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1257 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 1256 GGGTTCAAATCCCACAGCTGTCAATTT 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552503600905840