Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 143 3e-29
seq83020 111 2e-19
seq59309 96.9 4e-15
seq511665 93.3 5e-14
seq578098 89.7 6e-13
seq518659 87.8 2e-12
seq44391 86.0 7e-12
seq229824 84.2 2e-11
seq42226 84.2 2e-11
seq490538 82.4 8e-11
seq450047 82.4 8e-11
seq415056 82.4 8e-11
seq409374 82.4 8e-11
seq346877 82.4 8e-11
seq335505 82.4 8e-11
>seq620679
Length=2600
Score = 143 bits (158), Expect = 3e-29
Identities = 511/788 (65%), Gaps = 13/788 (2%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACG 92982
|||||||| || || || ||||||||| ||||| ||||| ||||| || | ||| ||
Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644
Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
|| |||| |||||| | ||| || |||| || |||| || | || ||||
Sbjct 1645 CAC-GGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGA 1703
Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT-GTACATTAAGCACGCAAAGT 93101
| || | || | |||| || | || | ||| | | |||||| ||||
Sbjct 1704 CTTCACGCG-CTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGGCACGCGAAGT 1762
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
|| || | ||||| ||||| || |||||||| || ||| || | ||| || | ||
Sbjct 1763 CGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCA 1822
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220
|| || || || ||||||||||| | ||| || || || || || || || ||||||
Sbjct 1823 ACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAAGATCCCTTCC 1881
Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280
||| || || ||||| || || || || ||| | | || | | |||||||||
Sbjct 1882 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGA---GCCGTCGATCCATTTC 1938
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG--GT 93338
| ||||| | || |||||| | ||||| | || |||| || ||| || |
Sbjct 1939 AGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAGACGG 1998
Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398
|| | ||||||||| ||| ||||| || |||| | || ||||| || || |
Sbjct 1999 GATTT--CTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGT 2056
Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458
||| ||||| || || || ||||| |||||||| | || |||| || ||| || |
Sbjct 2057 GGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGGACCT 2116
Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518
| | || || | ||||||| || ||| || || ||||| || || || || |
Sbjct 2117 CCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGG 2176
Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT 93578
| | | || | || || || ||||| | | || | ||||| | | | |
Sbjct 2177 CGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCGCTGGT 2236
Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638
||| |||||||| || ||| | ||||| ||||| || || || || |||||||| |
Sbjct 2237 CTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCT 2296
Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698
|||| || || | || ||||| || || ||| || || | ||||| | | || |
Sbjct 2297 CCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTTGGCCATCAGGA 2356
Query 93699 ACGGCTCT 93706
|||||||
Sbjct 2357 GCGGCTCT 2364
>seq83020
Length=697
Score = 111 bits (122), Expect = 2e-19
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGC 126322
|||||||||||||||||||||||||||| |||||||||| |||| | ||| || ||| |
Sbjct 304 AGTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATCCCCGTCTGGGGTC 363
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||||||||||||||||||||
Sbjct 364 GTGGGTTCGAACCCCACACCTGACA 388
>seq59309
Length=1347
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/104 (82%), Gaps = 4/104 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|||||| ||||||||||||||||||| |||||||||| | |||||| | ||| ||||
Sbjct 935 AGTCAGTTTGGCCGAGTGGTCTAAGGAGCCAGATTTAGGCTCTGGTCCGAACGG--GCGT 878
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368
|||||| || |||||| ||| ||| |||| || || |||||||
Sbjct 877 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTGATTTTTTGT 836
>seq511665
Length=638
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/97 (82%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321
|||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |
Sbjct 217 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 276
Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357
||||||||| || ||||| |||||| || | |||||
Sbjct 277 CGTGGGTTCAAATCCCACTTCTGACATAAATTTTATT 313
>seq578098
Length=5750
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/86 (84%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321
|||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |
Sbjct 1998 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 1939
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 1938 CGTGGGTTCAAATCCCACTTCTGACA 1913
>seq518659
Length=401
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/104 (80%), Gaps = 4/104 (4%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 104 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 161
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368
|||||| || |||||| ||| ||| |||| || | |||||||
Sbjct 162 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTCATTTTTTGT 203
>seq44391
Length=8785
Score = 86.0 bits (94), Expect = 7e-12
Identities = 73/89 (82%), Gaps = 6/89 (7%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320
||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 8161 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 8218
Query 126321 --GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 8219 GGGCGTGGGTTCAAATCCCACTTCTGACA 8247
>seq229824
Length=340
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/211 (70%), Gaps = 5/211 (2%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
||||| |||||| || | ||||| ||||| || |||||||| || ||| || | |
Sbjct 259 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGA 200
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaa 93210
|| || | || || || || || ||||||||||| | ||| || || || || || ||
Sbjct 199 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 141
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|| ||||||||| || || ||||| || || || || ||| | |||| | |
Sbjct 140 GATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGA---GCCGTC 84
Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTC 93301
||||||||| | ||||| | || ||||||
Sbjct 83 GATCCATTTCAGGGCCCACTGCGCCTTTTTC 53
>seq42226
Length=2786
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/102 (79%), Gaps = 4/102 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 1447 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1390
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
|||||| || |||||| ||| ||| |||| || ||||||
Sbjct 1389 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTTCATTTTT 1350
>seq490538
Length=823
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/92 (80%), Gaps = 6/92 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 347 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 404
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTAT 126353
||||||||| || ||||| |||||| || ||
Sbjct 405 CGTGGGTTCAAATCCCACTTCTGACACATCAT 436
>seq450047
Length=1490
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/92 (80%), Gaps = 6/92 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 682 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 625
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTAT 126353
||||||||| || ||||| |||||| || ||
Sbjct 624 CGTGGGTTCAAATCCCACTTCTGACACATCAT 593
>seq415056
Length=2854
Score = 82.4 bits (90), Expect = 8e-11
Identities = 82/103 (80%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 2575 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2518
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGA-ATTTTTGTT 126369
||| || |||||| ||| | ||| || ||| | || ||||||
Sbjct 2517 TTCAAATCCCACAGCTGTC--ATTGTTTTTGCATATCTTTGTT 2477
>seq409374
Length=499
Score = 82.4 bits (90), Expect = 8e-11
Identities = 82/103 (80%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 221 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 164
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG-GAATTTTTGTT 126369
||| || |||||| ||| | ||| || ||| ||| ||||||
Sbjct 163 TTCAAATCCCACAGCTGTC--ATTGTTTTTGCAAATCTTTGTT 123
>seq346877
Length=2184
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 1495 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1552
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 1553 GGGTTCAAATCCCACAGCTGTCAATTT 1579
>seq335505
Length=2387
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 1314 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1257
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 1256 GGGTTCAAATCCCACAGCTGTCAATTT 1230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552503600905840
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