Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq35568 95.1 1e-14 seq213125 86.0 5e-12 seq54869 84.2 2e-11 >seq35568 Length=7068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | |||||||||||||| || ||||| |||| | Sbjct 3661 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 3602 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||| || || ||||| || || Sbjct 3601 GACACCATTGATAATGTGAAAGCTAAAATTCAGGACAAGGAGGGTATTCCCCCAGACCAG 3542 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| ||| || || || | || ||| | || | || || |||||| Sbjct 3541 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 3482 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| | |||||||||||||| Sbjct 3481 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 3435 >seq213125 Length=352 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| ||||| ||||| || |||| ||| | Sbjct 16 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTATGGAGGTGGAGAGCTCT 75 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 ||| | ||| | | || ||| || ||| || || || || | |||| || |||| Sbjct 76 GATACCATTGACAATGTCAAAGCCAAGATTCAAGATAAGGAGGGTAT-CCCGCCGGATCA 134 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| | || | ||| || || || ||||| ||| | |||| |||| |||||||| Sbjct 135 GCAAAGGTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGAACTTTGGC-GATTATAA 193 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || ||||| ||||| || || | || | ||||| || ||||| Sbjct 194 TATCCAGAAAGAGTCTACCCTGCACCTTGTTCTCCGTCTCCGTGGTGG 241 >seq54869 Length=20101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | ||||| || || || ||| |||| ||| Sbjct 3741 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTCA 3800 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||| ||| ||||| || ||| |||| || || Sbjct 3801 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 3860 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || ||||| | || ||| | ||| | || || || ||| Sbjct 3861 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGACTACAAT 3920 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || || || ||||||||||| || ||||||| Sbjct 3921 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCA 3969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | ||||| || || || ||| |||| || Sbjct 3969 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAGAGTTCT 4028 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | || || ||| ||| ||||| || ||| |||| || || Sbjct 4029 GATACAATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 4088 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || ||||| | || ||| | ||| | || || || ||| Sbjct 4089 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGACTACAAT 4148 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || || || ||||||||||| || ||||||| Sbjct 4149 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCA 4197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419812644497200