Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq614855 91.5 3e-13
seq574385 91.5 3e-13
seq326494 91.5 3e-13
seq457509 89.7 1e-12
seq96510 89.7 1e-12
seq33459 89.7 1e-12
seq624531 87.8 4e-12
seq587821 87.8 4e-12
seq536700 87.8 4e-12
seq504689 87.8 4e-12
seq452942 87.8 4e-12
seq340152 87.8 4e-12
seq327622 87.8 4e-12
seq309682 87.8 4e-12
seq282873 87.8 4e-12
seq124320 87.8 4e-12
seq41510 87.8 4e-12
seq595238 86.0 1e-11
seq569544 86.0 1e-11
seq564926 86.0 1e-11
seq423885 86.0 1e-11
seq392844 86.0 1e-11
seq323601 86.0 1e-11
seq62339 86.0 1e-11
seq28272 86.0 1e-11
seq379414 84.2 4e-11
seq321180 84.2 4e-11
seq145064 84.2 4e-11
seq126097 84.2 4e-11
seq42214 84.2 4e-11
>seq614855
Length=7237
Score = 91.5 bits (100), Expect = 3e-13
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 598 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 657
Query 142563 CCCCACATCGGGCAGAAGTC 142582
|||||| |||| ||||||
Sbjct 658 CCCCACGGTGGGC-GAAGTC 676
>seq574385
Length=1552
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 829 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 888
Query 142563 CCCCACATCGGGC 142575
||||||| ||||
Sbjct 889 CCCCACAGTGGGC 901
>seq326494
Length=652
Score = 91.5 bits (100), Expect = 3e-13
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 383 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 324
Query 142563 CCCCACATCGGGCAGAAGTC 142582
|||||| |||| ||||||
Sbjct 323 CCCCACGGTGGGC-GAAGTC 305
>seq457509
Length=633
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 633 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 574
Query 142562 GCCCCAC 142568
|||||||
Sbjct 573 GCCCCAC 567
>seq96510
Length=579
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 508 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 567
Query 142562 GCCCCAC 142568
|||||||
Sbjct 568 GCCCCAC 574
>seq33459
Length=1728
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 1202 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1261
Query 142562 GCCCCAC 142568
|||||||
Sbjct 1262 GCCCCAC 1268
>seq624531
Length=811
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 244 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 303
Query 142563 CCCCAC 142568
||||||
Sbjct 304 CCCCAC 309
>seq587821
Length=3037
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2153 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2094
Query 142563 CCCCAC 142568
||||||
Sbjct 2093 CCCCAC 2088
>seq536700
Length=885
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 298 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 357
Query 142563 CCCCAC 142568
||||||
Sbjct 358 CCCCAC 363
>seq504689
Length=1088
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 870 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 929
Query 142563 CCCCAC 142568
||||||
Sbjct 930 CCCCAC 935
>seq452942
Length=807
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 189 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 248
Query 142563 CCCCAC 142568
||||||
Sbjct 249 CCCCAC 254
>seq340152
Length=2152
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 210 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 269
Query 142563 CCCCAC 142568
||||||
Sbjct 270 CCCCAC 275
>seq327622
Length=642
Score = 87.8 bits (96), Expect = 4e-12
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 380 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAC 321
Query 142563 CCCCACATCGGGCAGAAGTC 142582
|||||| |||| ||||||
Sbjct 320 CCCCACGGTGGGC-GAAGTC 302
>seq309682
Length=1005
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 362 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 421
Query 142563 CCCCAC 142568
||||||
Sbjct 422 CCCCAC 427
>seq282873
Length=310
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 68 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9
Query 142563 CCCCAC 142568
||||||
Sbjct 8 CCCCAC 3
>seq124320
Length=473
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 71 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12
Query 142563 CCCCAC 142568
||||||
Sbjct 11 CCCCAC 6
>seq41510
Length=3881
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 260 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 319
Query 142563 CCCCAC 142568
||||||
Sbjct 320 CCCCAC 325
>seq595238
Length=824
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 70 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11
Query 142564 CCCAC 142568
|||||
Sbjct 10 CCCAC 6
>seq569544
Length=614
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 252 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 311
Query 142564 CCCAC 142568
|||||
Sbjct 312 CCCAC 316
>seq564926
Length=477
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 115 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 174
Query 142564 CCCAC 142568
|||||
Sbjct 175 CCCAC 179
>seq423885
Length=1031
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 157 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 216
Query 142564 CCCAC 142568
|||||
Sbjct 217 CCCAC 221
>seq392844
Length=644
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 2 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61
Query 142564 CCCAC 142568
|||||
Sbjct 62 CCCAC 66
>seq323601
Length=799
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 302 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 243
Query 142564 CCCAC 142568
|||||
Sbjct 242 CCCAC 238
>seq62339
Length=5304
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 5149 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5090
Query 142564 CCCAC 142568
|||||
Sbjct 5089 CCCAC 5085
>seq28272
Length=9242
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 1493 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1552
Query 142564 CCCAC 142568
|||||
Sbjct 1553 CCCAC 1557
>seq379414
Length=3123
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564
|||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||||
Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60
Query 142565 CCAC 142568
||||
Sbjct 61 CCAC 64
>seq321180
Length=1077
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||| ||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 169 AGCCCGTCTAGCTAAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 228
Query 142563 CCCCAC 142568
||||||
Sbjct 229 CCCCAC 234
>seq145064
Length=430
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||| ||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 315 TAGACCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 256
Query 142562 GCCCCA 142567
||||||
Sbjct 255 GCCCCA 250
>seq126097
Length=468
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 64 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5
Query 142563 CCCC 142566
||||
Sbjct 4 CCCC 1
>seq42214
Length=1938
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||| ||||||||
Sbjct 1292 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTTGGTTCGAG 1233
Query 142563 CCCCAC 142568
||||||
Sbjct 1232 CCCCAC 1227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1019593354217406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |