Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq418407 89.7 4e-13 seq54869 89.7 4e-13 seq25161 82.4 5e-11 >seq418407 Length=782 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| ||| |||| || | Sbjct 489 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 548 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| ||| |||||||||||| | || | |||| Sbjct 549 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 608 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || || || || ||| | || |||| |||||||| Sbjct 609 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCACACCCTGGCTGATTACAAC 668 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || |||||| | || | ||| | || || || Sbjct 669 ATTCAAAAGGAGTCCACCCTTCATTTAGTTCTTCGTCTGCGTGGTGG 715 >seq54869 Length=20101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || || || ||| |||| ||| || Sbjct 3741 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTCA 3800 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| ||| || || ||||| | ||| | |||| Sbjct 3801 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 3860 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || ||||| || ||||| ||||| ||| ||| | || || |||||| Sbjct 3861 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGACTACAAT 3920 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| |||||||| |||| || ||| | || || || Sbjct 3921 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGG 3967 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || || || ||| |||| || | Sbjct 3969 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAGAGTTCT 4028 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| || || ||||| | ||| | |||| Sbjct 4029 GATACAATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 4088 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || ||||| || ||||| ||||| ||| ||| | || || |||||| Sbjct 4089 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCAGACTACAAT 4148 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| |||||||| |||| || ||| | || || || Sbjct 4149 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGG 4195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| | ||| | |||| ||||| || || ||||| || ||||| ||||| Sbjct 3606 GACAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAG 3665 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| | || || |||||||||||||||||||| |||||||| |||| || Sbjct 3666 GATGGTCGCACTCTTGCAGACTACAATATTCAGAAGGAATCAACTCTTCACTTGGTGTTG 3725 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 3726 CGTCTCCGTGGTGG 3739 >seq25161 Length=2200 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| |||| | | || ||||| || |||||||| |||||||| ||||| Sbjct 654 GACAAGGAGGGCATACCCCCAGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAG 713 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || | |||||||||||||| || ||||| ||||||||||| |||| | Sbjct 714 GATGGCCGCACCCTTGCCGATTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTGCTC 773 Query 22047 CGTTTACGAGGAGGA 22061 ||| | || || ||| Sbjct 774 CGTCTGCGTGGTGGA 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355392680001964