Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq620679 251 1e-61 seq229824 96.9 6e-15 >seq620679 Length=2600 Score = 251 bits (278), Expect = 1e-61 Identities = 504/736 (68%), Gaps = 12/736 (2%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| ||| |||||| |||||||||||||| || || |||||||||||||| Sbjct 2314 AGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGG 2255 Query 42349 AGATTGACCTGG-CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTT 42407 || | || || | ||||| || ||| |||||| | || | ||| ||| Sbjct 2254 AGGTCGATCTCGACCAAGACCAGCGCCA-CTGGGAAACCCTAACCCCCGGCGAGAAGCAC 2196 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||| || | || ||||||||||||||||| |||||||| ||| ||||| || Sbjct 2195 TTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTC 2136 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 ||| ||||||||||| ||||| ||| || |||||||| |||||||||||||||| Sbjct 2135 GCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAG 2076 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTG 42587 || || || |||||| | ||||| ||| ||||| | || ||| | || |||||| Sbjct 2075 ATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAA 2016 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 || | | |||| | | || || |||| | || || || || ||| || ||| Sbjct 2015 GACTCGGACGAGAAATCCCGTCTCTTTCGGGCCGTCGACACCATCCCTTGCGTCGCGAAA 1956 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 |||||| | ||||| || || |||||||| | | || | || |||| ||| | | Sbjct 1955 AAGGCGCAGTGGGCCCTGAAATGGATCGA-CGGCTCG--GAGACTTTCGCGGAGCGAATC 1899 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| || ||| || || |||||||||||||| |||| | | || || ||| Sbjct 1898 GTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGG 1839 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || || || | || |||||| || || |||||||||||||| | ||| | || Sbjct 1838 CTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGAT 1779 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC 42887 || || || || | ||||| || ||||| || | ||| || |||| || |||| | Sbjct 1778 GAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC---CCTCCTCCGGATGAAGCTC 1722 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | ||||||| || | | ||| | | | || || || || |||| ||||||| || Sbjct 1721 ACCGAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAGGGAGTTCGTC 1662 Query 42948 ACGCAGTCGC-TGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 || | ||| | ||||| || | || || |||||| || || ||| | |||||| Sbjct 1661 -TGC-GACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACA 1604 Query 43006 TCCAGTACGTCGCCGA 43021 || ||| |||||| || Sbjct 1603 TCGAGTTCGTCGCTGA 1588 >seq229824 Length=340 Score = 96.9 bits (106), Expect = 6e-15 Identities = 198/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||| |||| | || || || || ||| || ||| |||||| | ||||| || || Sbjct 18 CTCTTCCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGTGGGCCCTGAAA 77 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||||| | |||| || |||| ||| || | || ||||| || ||| || Sbjct 78 TGGATCGACGGCTCCGAG---ACTTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAA 134 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 || |||||||||||||| |||| | | || || ||||| || || | || |||| Sbjct 135 GGGATCTTCTTCTCGGGGAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATG 194 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 || || || || ||||||||||| | ||| | || || || || || | ||||| Sbjct 195 CCGGGTCTGACTTTCTCGAACGAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTC 254 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || || | ||| || |||| || |||| | | ||||||| || Sbjct 255 GCGTGTCTTCTCTACTC---CCTCCTCCGGATGAAGCTCACCGAGGAGCGCGT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 936950147104160