Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq620679 107 4e-18 >seq620679 Length=2600 Score = 107 bits (118), Expect = 4e-18 Identities = 293/437 (67%), Gaps = 10/437 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||| |||| | ||||| ||||| || | || || ||||| ||| Sbjct 1913 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 1854 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||| || |||||||| || || ||||||| || || | || |||||| Sbjct 1853 TGCGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 1794 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCT 243467 || ||| || || || ||||| ||| | |||| ||| ||| | || || || Sbjct 1793 TTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGC-CTTCTCTACTCCCTCCT 1735 Query 243468 CCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGAA-GCAGTTGAAAA 243524 || || ||||| ||| | | || || || |||| | | ||| || ||||| | Sbjct 1734 CCGGATGAAGCTCACCGA--GGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTGACAT 1678 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCTGAAC 243583 || | ||| ||| | |||||||| | || ||| | |||| |||| |||||| ||| | Sbjct 1677 AGAGAGGGAGTTCGTCTGCGACGCGTTACCGTGC-GCCTTAGTTGGGATGAACGGTGATC 1619 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||||| ||||||||||| ||||| || || | | | ||| | || |||| || Sbjct 1618 TGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGGTATGGGA 1559 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||| | ||||||| |||| | |||||||| ||| ||||| ||||| | Sbjct 1558 AGCTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGA 1499 Query 243704 CTAACTTCTTCGAAAAG 243720 | || ||||| || ||| Sbjct 1498 CCAATTTCTTTGAGAAG 1482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1094034693542100