Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq620679 127 2e-24 seq229824 107 2e-18 >seq620679 Length=2600 Score = 127 bits (140), Expect = 2e-24 Identities = 355/536 (66%), Gaps = 13/536 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 1467 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 1526 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCA--CCCCAATCTGTTTGAGGAGA 125875 ||||||||||||||| | || | || || |||||| | || || Sbjct 1527 CCAATCAAATGGGTTCTGC-ACATCATACAGCTTCCCATACCCCAA-CGCACCCAGCAGC 1584 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || | |||||| ||| |||| || |||| || || || || | ||||||||| | Sbjct 1645 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 1704 Query 125996 TGAATGGTGTCCACCCC-AGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | | | ||| | || | || | | | | | || || |||| | || Sbjct 1705 TTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGAAG 1761 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || |||||| || || || || ||||| | || ||||||||| ||| || ||||| Sbjct 1762 TCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATC 1821 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 | || ||||| || | ||| || ||||| || || |||||||||||||| || ||| Sbjct 1822 AACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCC 1881 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTC 126232 || || ||||| || | || ||||| || || | ||| ||| | ||| ||| Sbjct 1882 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGA---GCCGTCGATCCATTTC 1938 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 | |||||||||||||||||| ||| || |||| ||| | || || |||||| Sbjct 1939 AGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAG 1994 >seq229824 Length=340 Score = 107 bits (118), Expect = 2e-18 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || || || || ||||| | || |||||||| ||| || ||||| | || Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || ||||| || || |||||||||||||| || ||||| || Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126 Query 126178 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCACTTCATCG 126236 ||||| || | || ||||| || |||| || || ||| | ||| |||| | Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCG-GA---GCCGTCGATCCATTTCAGGG 70 Query 126237 CCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||||||||||||||||| ||| || |||| ||| Sbjct 69 CCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592679561955280