Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq39735 275 8e-69 seq32757 197 2e-45 >seq39735 Length=4112 Score = 275 bits (304), Expect = 8e-69 Identities = 268/345 (78%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 7786 TTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTC 7845 ||||||||||| || ||||| || || ||||| || ||||| || ||||| ||||| || Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925 Query 7846 TTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGA 7905 ||||||||| | ||||| | || || ||| || |||||||| | | || | Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865 Query 7906 AGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGAC 7965 ||||||||| | ||||||||||| |||||||| || ||||| ||||| |||||||| || Sbjct 1864 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 1805 Query 7966 GCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTA 8025 || |||||||| || |||||||| |||||||||||||| |||||||| |||| |||| | Sbjct 1804 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 1745 Query 8026 GTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGG 8085 |||||| ||||||||||| || ||||||||| ||||||| || |||||||| | || Sbjct 1744 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 1685 Query 8086 ATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTA 8130 |||| | ||| | ||||| || || ||||| ||||| || || Sbjct 1684 GTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 197 bits (218), Expect = 2e-45 Identities = 238/320 (74%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 8101 AGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAG 8160 ||||| || || ||||| ||||| || ||||| ||| ||||| || |||||||| || Sbjct 4027 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 3968 Query 8161 ACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATAC--CGATCAGGAAGTGG 8218 |||| || ||||||||||||||||||||| || ||| || ||| | | | |||||| Sbjct 3967 ACGGAAACTAAGTTCCCACTCACGACCCATATA-GCA-AGCTACACCAAGTAAGAAGTGT 3910 Query 8219 AAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCC 8278 | | || || | |||| ||||||||||| | ||| ||||||| |||||| |||||| Sbjct 3909 AGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCC 3850 Query 8279 CAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATG 8338 || || || || ||||| | ||| ||||| ||||| ||| | || ||||| || || Sbjct 3849 CATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATA 3790 Query 8339 ATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACA 8398 || ||||| || || | | || |||| || |||||||| || || ||||| || || Sbjct 3789 ATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACC 3730 Query 8399 GGAGGAGCAGCGACGAAAGC 8418 ||||| ||||| | |||||| Sbjct 3729 GGAGGTGCAGCAATGAAAGC 3710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617256937843040