Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq620679 113 5e-20 seq229824 102 1e-16 >seq620679 Length=2600 Score = 113 bits (124), Expect = 5e-20 Identities = 353/537 (66%), Gaps = 15/537 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || | |||||| ||||| || |||||||| | || || || |||||| Sbjct 1467 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 1526 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCA--CCCCAATCTGTTTGAGGAGA 127348 ||||||||||||||| | || | || || |||||| | || || Sbjct 1527 CCAATCAAATGGGTTCTGC-ACATCATACAGCTTCCCATACCCCAA-CGCACCCAGCAGC 1584 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || | |||||| ||| |||| || |||| ||||| || || | ||| ||||| | Sbjct 1645 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 1704 Query 127469 TGAATAGTGTCCACCCC-AGGTCTATT--GCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 | | ||| | || | || | | | | | || || ||| || || Sbjct 1705 TTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CAC-GCGAAG 1761 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || |||||| || || || || ||||| | || ||||||||| |||||| ||||| Sbjct 1762 TCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATC 1821 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | || ||||| || | ||| || ||||| || || || |||||||||||||| ||| Sbjct 1822 AACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCC 1881 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTT 127704 || || ||||| || | | ||||| || |||| | | | || | ||| || Sbjct 1882 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC----CGTCGATCCATTT 1937 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || |||||||| ||||||||| ||| || |||| ||| | || || |||||| Sbjct 1938 CAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAG 1994 >seq229824 Length=340 Score = 102 bits (112), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| || || || || ||||| | || |||||||| |||||| ||||| | || Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| || || || |||||||||||||| ||||| || Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 ||||| || | | ||||| || |||| ||| | || | ||| |||| | Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGAGC----CGTCGATCCATTTCAGGG 70 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 ||||||| ||||||||| ||| || |||| ||| Sbjct 69 CCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608706766900560