Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 113 5e-20
seq229824 102 1e-16
>seq620679
Length=2600
Score = 113 bits (124), Expect = 5e-20
Identities = 353/537 (66%), Gaps = 15/537 (3%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| ||||| || | |||||| ||||| || |||||||| | || || || ||||||
Sbjct 1467 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 1526
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCA--CCCCAATCTGTTTGAGGAGA 127348
||||||||||||||| | || | || || |||||| | || ||
Sbjct 1527 CCAATCAAATGGGTTCTGC-ACATCATACAGCTTCCCATACCCCAA-CGCACCCAGCAGC 1584
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
| ||| | |||| |||| ||||||| | |||| ||| |||||| || | | |
Sbjct 1585 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 1644
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || | |||||| ||| |||| || |||| ||||| || || | ||| ||||| |
Sbjct 1645 CACGGTAACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGATTGAC 1704
Query 127469 TGAATAGTGTCCACCCC-AGGTCTATT--GCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525
| | ||| | || | || | | | | | || || ||| || ||
Sbjct 1705 TTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CAC-GCGAAG 1761
Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585
|| |||||| || || || || ||||| | || ||||||||| |||||| |||||
Sbjct 1762 TCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATC 1821
Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645
| || ||||| || | ||| || ||||| || || || |||||||||||||| |||
Sbjct 1822 AACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCC 1881
Query 127646 ACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTT 127704
|| || ||||| || | | ||||| || |||| | | | || | ||| ||
Sbjct 1882 ACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGC----CGTCGATCCATTT 1937
Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761
|| |||||||| ||||||||| ||| || |||| ||| | || || ||||||
Sbjct 1938 CAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAG 1994
>seq229824
Length=340
Score = 102 bits (112), Expect = 1e-16
Identities = 152/214 (71%), Gaps = 5/214 (2%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| || || || || ||||| | || |||||||| |||||| ||||| | ||
Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
||||| || | ||| || ||||| || || || |||||||||||||| ||||| ||
Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126
Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709
||||| || | | ||||| || |||| ||| | || | ||| |||| |
Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGAGC----CGTCGATCCATTTCAGGG 70
Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743
||||||| ||||||||| ||| || |||| |||
Sbjct 69 CCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 36
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608706766900560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |