Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 165 1e-35
seq229824 114 2e-20
>seq620679
Length=2600
Score = 165 bits (182), Expect = 1e-35
Identities = 548/837 (65%), Gaps = 19/837 (2%)
Strand=Plus/Plus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706
||||||| || || |||||||| |||| | | || | | ||||| | | ||||||
Sbjct 1481 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 1539
Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766
|||| ||| | ||| ||||| | | || | || |||||| ||| || || || ||
Sbjct 1540 TTCTGCACATCATACAGCTTCCCATACCCCAACGCACCCAGCAGCCTATCAGCGACGAAC 1599
Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825
|||||||| || |||| | |||| ||| ||||| | | | | |||| | ||| ||
Sbjct 1600 TCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGCACGGTAA-CGCGTC 1658
Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGT 159884
| | |||||| |||| || || ||||| ||| | ||| || | || || || |
Sbjct 1659 GCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCG-CACGATTGACTTCACGCGCTCCT 1717
Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944
|||| | | | || | | || |||||||| ||||||||||| || |
Sbjct 1718 CGGTGAGCTTCATCCGGAGGAGGGAGT---AGAGAAGGCACGCGAAGTCGCAGTGGAGGC 1774
Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004
| || || || ||||| |||||||| || | | | || |||||||| | ||| ||| ||
Sbjct 1775 CTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTT 1834
Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063
| |||||||| || | |||| |||| || | | || |||||||| |||||| || ||
Sbjct 1835 TAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAG 1893
Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123
||||||| | ||| | ||| | | | | | | | |||| | |||||| |
Sbjct 1894 GCCACGATTCGCTCCGCGAAA---GTCTCCGAGCCGTCGATCCATTTCAGGGCCCACTGC 1950
Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183
||||| || |||| ||| || ||| |||||||| ||| | | | | ||| | |
Sbjct 1951 GCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAGACGGGATTTCTCGTCC 2010
Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243
|| ||||| || | | || |||||| || | ||| | || || ||
Sbjct 2011 GAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATC 2070
Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGAACCT 160302
|| ||||| ||| |||||| ||||||| ||| ||| ||||||| |||||||
Sbjct 2071 GCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA-CCTGGACCTCCTTCATGAACCT 2129
Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362
| | ||||| | || | ||||||| ||| || ||||| || | |||||||
Sbjct 2130 TCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGT 2189
Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAA 160422
|||||| || ||||| | | | || |||||||||| | ||||||| | |
Sbjct 2190 GATGAAGTGCTTCTCGCCGGGGGTTAG---GGTTTCCCAGTGGCGCTGGTCTTGGTCGAG 2246
Query 160423 ATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479
||| ||||| || ||| |||| | |||| || | |||||||| |||||||
Sbjct 2247 ATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTCCCAGAT 2303
>seq229824
Length=340
Score = 114 bits (126), Expect = 2e-20
Identities = 173/243 (71%), Gaps = 5/243 (2%)
Strand=Plus/Minus
Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976
|| || ||||| ||||||||||| || || || || || ||||| |||||||| || |
Sbjct 265 AGAAGACACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAA 206
Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036
| || |||||||| | ||| ||| ||| |||||||| || | |||| |||| || | |
Sbjct 205 GTCAGACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTCCCCGA 147
Query 160037 -AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095
|| |||||||| |||||| || || ||||||| || ||| | ||| | | ||
Sbjct 146 GAAGAAGATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAA---GTCTCGGA 90
Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGAC 160155
| | | | |||| | |||||| | ||||| || |||| ||| || ||| |||||
Sbjct 89 GCCGTCGATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGAC 30
Query 160156 GGC 160158
|||
Sbjct 29 GGC 27
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 788933448500960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |