Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq620679 165 1e-35 seq229824 114 2e-20 >seq620679 Length=2600 Score = 165 bits (182), Expect = 1e-35 Identities = 548/837 (65%), Gaps = 19/837 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706 ||||||| || || |||||||| |||| | | || | | ||||| | | |||||| Sbjct 1481 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 1539 Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 |||| ||| | ||| ||||| | | || | || |||||| ||| || || || || Sbjct 1540 TTCTGCACATCATACAGCTTCCCATACCCCAACGCACCCAGCAGCCTATCAGCGACGAAC 1599 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 |||||||| || |||| | |||| ||| ||||| | | | | |||| | ||| || Sbjct 1600 TCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGCACGGTAA-CGCGTC 1658 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | |||||| |||| || || ||||| ||| | ||| || | || || || | Sbjct 1659 GCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCG-CACGATTGACTTCACGCGCTCCT 1717 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| | | | || | | || |||||||| ||||||||||| || | Sbjct 1718 CGGTGAGCTTCATCCGGAGGAGGGAGT---AGAGAAGGCACGCGAAGTCGCAGTGGAGGC 1774 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || || ||||| |||||||| || | | | || |||||||| | ||| ||| || Sbjct 1775 CTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTT 1834 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| || | | || |||||||| |||||| || || Sbjct 1835 TAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAG 1893 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 ||||||| | ||| | ||| | | | | | | | |||| | |||||| | Sbjct 1894 GCCACGATTCGCTCCGCGAAA---GTCTCCGAGCCGTCGATCCATTTCAGGGCCCACTGC 1950 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||| || |||| ||| || ||| |||||||| ||| | | | | ||| | | Sbjct 1951 GCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAGACGGGATTTCTCGTCC 2010 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 || ||||| || | | || |||||| || | ||| | || || || Sbjct 2011 GAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATC 2070 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGAACCT 160302 || ||||| ||| |||||| ||||||| ||| ||| ||||||| ||||||| Sbjct 2071 GCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA-CCTGGACCTCCTTCATGAACCT 2129 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| | || | ||||||| ||| || ||||| || | ||||||| Sbjct 2130 TCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGT 2189 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAA 160422 |||||| || ||||| | | | || |||||||||| | ||||||| | | Sbjct 2190 GATGAAGTGCTTCTCGCCGGGGGTTAG---GGTTTCCCAGTGGCGCTGGTCTTGGTCGAG 2246 Query 160423 ATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||| ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 2247 ATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTCCCAGAT 2303 >seq229824 Length=340 Score = 114 bits (126), Expect = 2e-20 Identities = 173/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || || ||||| ||||||||||| || || || || || ||||| |||||||| || | Sbjct 265 AGAAGACACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAA 206 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 | || |||||||| | ||| ||| ||| |||||||| || | |||| |||| || | | Sbjct 205 GTCAGACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTCCCCGA 147 Query 160037 -AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 || |||||||| |||||| || || ||||||| || ||| | ||| | | || Sbjct 146 GAAGAAGATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAA---GTCTCGGA 90 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGAC 160155 | | | | |||| | |||||| | ||||| || |||| ||| || ||| ||||| Sbjct 89 GCCGTCGATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGAC 30 Query 160156 GGC 160158 ||| Sbjct 29 GGC 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788933448500960