Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq581596 96.9 2e-15 seq53130 89.7 4e-13 seq25161 89.7 4e-13 seq492976 84.2 2e-11 >seq581596 Length=910 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/236 (70%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||||||||| ||| || || ||||| || |||| Sbjct 187 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAAT 245 Query 39548 CGGCCAAAACGCGTTC-ATCGTCC---AATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 | | || | || | | ||||| | || || || |||| || | | |||||| Sbjct 246 CTGACA----GTGTCCTACCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGG 301 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | || | |||||||||||| || ||| || || | | | |||||||| | Sbjct 302 TCTGGGGAAATGCCTTCTTTGTCCTGAATCTTTGCCTTGATATTATCAATTGTGTCTGAG 361 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| ||||||||||| ||||| || || ||||| || || ||||| ||||| Sbjct 362 CTTTCCACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 417 >seq53130 Length=9294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| || || || ||||| ||||||||| Sbjct 5443 CCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCC 5502 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||| || || ||| | || || || | |||||| |||| ||| Sbjct 5503 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 5562 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | ||| | | | || || | ||| || || Sbjct 5563 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGCTCTCGAC 5621 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || |||| ||||| |||||||||||||| Sbjct 5622 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 5669 >seq25161 Length=2200 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| || || ||||| ||||| || ||| ||||| || || || || || Sbjct 1015 CCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCA 956 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | | || ||||| ||||| || |||| || | | ||||||||| | ||| Sbjct 955 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 896 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| |||||| || | | | | ||| || | ||||||||| Sbjct 895 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCACC 836 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || ||||| || || || | || ||||| ||||||||||| Sbjct 835 TCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 789 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| || | ||| || ||||| ||||| |||||||| Sbjct 787 CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCA 728 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || | | ||||||||| | |||| Sbjct 727 AGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGT 668 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || ||| || | | | | ||| || | || || || Sbjct 667 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACC 608 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || || || || || | ||| || || |||||||||||| Sbjct 607 TCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 560 >seq492976 Length=9861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| || || || ||||| || |||||| Sbjct 8594 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCC 8653 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||| || || ||| | || || || | |||||| |||| ||| Sbjct 8654 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 8713 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | ||| | | || | || | ||| || || Sbjct 8714 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGCTCTCGAC 8772 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| ||||| || || |||| ||||| |||||||||||||| Sbjct 8773 CTCGAGAGTGATTGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 8820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344719530999278