Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq581596 96.9 2e-15
seq53130 89.7 4e-13
seq25161 89.7 4e-13
seq492976 84.2 2e-11
>seq581596
Length=910
Score = 96.9 bits (106), Expect = 2e-15
Identities = 165/236 (70%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || || | ||| || |||||||||| ||| || || ||||| || ||||
Sbjct 187 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAAT 245
Query 39548 CGGCCAAAACGCGTTC-ATCGTCC---AATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603
| | || | || | | ||||| | || || || |||| || | | ||||||
Sbjct 246 CTGACA----GTGTCCTACCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGG 301
Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663
|| | || | |||||||||||| || ||| || || | | | |||||||| |
Sbjct 302 TCTGGGGAAATGCCTTCTTTGTCCTGAATCTTTGCCTTGATATTATCAATTGTGTCTGAG 361
Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||||||| ||||||||||| ||||| || || ||||| || || ||||| |||||
Sbjct 362 CTTTCCACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 417
>seq53130
Length=9294
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | ||| || || || ||||| |||||||||
Sbjct 5443 CCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCC 5502
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| ||||| || || ||| | || || || | |||||| |||| |||
Sbjct 5503 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 5562
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| || || ||||| || || || | ||| | | | || || | ||| || ||
Sbjct 5563 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGCTCTCGAC 5621
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || |||| ||||| ||||||||||||||
Sbjct 5622 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 5669
>seq25161
Length=2200
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||| || || ||||| ||||| || ||| ||||| || || || || ||
Sbjct 1015 CCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCA 956
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | | | | || ||||| ||||| || |||| || | | ||||||||| | |||
Sbjct 955 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 896
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| || || ||||| |||||| || | | | | ||| || | |||||||||
Sbjct 895 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCACC 836
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || ||||| || || || | || ||||| |||||||||||
Sbjct 835 TCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 789
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||| ||| || |||| || | ||| || ||||| ||||| ||||||||
Sbjct 787 CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCA 728
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| |||| || | ||||| ||| |||| || | | ||||||||| | ||||
Sbjct 727 AGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGT 668
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||| || ||||| || ||| || | | | | ||| || | || || ||
Sbjct 667 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACC 608
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || || || || || | ||| || || ||||||||||||
Sbjct 607 TCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 560
>seq492976
Length=9861
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || ||||| || | ||| || || || ||||| || ||||||
Sbjct 8594 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCC 8653
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| ||||| || || ||| | || || || | |||||| |||| |||
Sbjct 8654 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 8713
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671
| || || ||||| || || || | ||| | | || | || | ||| || ||
Sbjct 8714 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCAGAGCTCTCGAC 8772
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| ||||| || || |||| ||||| ||||||||||||||
Sbjct 8773 CTCGAGAGTGATTGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 8820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 344719530999278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |