Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq37849 132 6e-26
seq620679 98.7 1e-15
seq21555 93.3 5e-14
seq229824 89.7 6e-13
>seq37849
Length=6260
Score = 132 bits (146), Expect = 6e-26
Identities = 239/342 (70%), Gaps = 18/342 (5%)
Strand=Plus/Minus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973
|||||| ||||| | | || ||||| || | |||| ||||| || |||| ||
Sbjct 3983 ATCAAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGT---GTTACCCTC 3927
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
|||||||||||| |||||||||||||| |||| || ||||| | ||||||||| ||
Sbjct 3926 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT-- 3869
Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090
|||| |||| | | ||| ||| || |||||||| ||||||| || || ||
Sbjct 3868 -CCACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 3810
Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
||| ||| |||||| ||| |||| ||| ||||| || || || || || |||
Sbjct 3809 GCAAGGTGCATTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACA 3752
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207
||||||||||| || ||||| | | | | | || | || || || ||| || |||
Sbjct 3751 CCAACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTC 3693
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
||| ||||| || || || |||||||| || || |||||
Sbjct 3692 ACCAGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 3651
>seq620679
Length=2600
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|| || |||||| || | || || || || || || || ||||||||||| || ||||
Sbjct 1913 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 1854
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
||||| || | |||||| || ||||| || | ||||| ||||| |||||| ||||||
Sbjct 1853 TGCGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 1794
Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320
| ||||| || || || || ||||||
Sbjct 1793 TTGATCTCGCGAGATGAAGGCCTCCAC 1767
>seq21555
Length=2254
Score = 93.3 bits (102), Expect = 5e-14
Identities = 191/280 (68%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| || |||||||| ||||| | ||| |||||||| || |||| |||||||| |
Sbjct 316 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 259
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | ||| || || | | ||| | || |||||||||||||||||||| || | |||
Sbjct 258 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACATAATG 199
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149
|| || ||||| | || ||||| | |||| || | | || ||||| |
Sbjct 198 CAGGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 141
Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209
| ||||||| ||||||||| | | |||| ||| || ||| || || ||||
Sbjct 140 CCACAAACAGCTCCACAAACTCCGAAGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 81
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| |||| ||| || || || || ||||| || ||||| ||
Sbjct 80 CAGCAACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 41
>seq229824
Length=340
Score = 89.7 bits (98), Expect = 6e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|| || ||||| || | || || || || || || || ||||||||||| || ||||
Sbjct 99 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 158
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
||||| || | |||||| || ||||| || | ||||| ||||| ||||| ||||||
Sbjct 159 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAG 218
Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320
| ||||| || || || || ||||||
Sbjct 219 TTGATCTCGCGAGATGAAGGCCTCCAC 245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615885354535520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |