Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq37849 132 6e-26 seq620679 98.7 1e-15 seq21555 93.3 5e-14 seq229824 89.7 6e-13 >seq37849 Length=6260 Score = 132 bits (146), Expect = 6e-26 Identities = 239/342 (70%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| ||||| | | || ||||| || | |||| ||||| || |||| || Sbjct 3983 ATCAAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGT---GTTACCCTC 3927 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| |||||||||||||| |||| || ||||| | ||||||||| || Sbjct 3926 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT-- 3869 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | ||| ||| || |||||||| ||||||| || || || Sbjct 3868 -CCACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 3810 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| ||| |||||| ||| |||| ||| ||||| || || || || || ||| Sbjct 3809 GCAAGGTGCATTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACA 3752 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 ||||||||||| || ||||| | | | | | || | || || || ||| || ||| Sbjct 3751 CCAACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTC 3693 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| ||||| || || || |||||||| || || ||||| Sbjct 3692 ACCAGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 3651 >seq620679 Length=2600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || |||||| || | || || || || || || || ||||||||||| || |||| Sbjct 1913 TTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 1854 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| ||||| |||||| |||||| Sbjct 1853 TGCGCGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 1794 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || |||||| Sbjct 1793 TTGATCTCGCGAGATGAAGGCCTCCAC 1767 >seq21555 Length=2254 Score = 93.3 bits (102), Expect = 5e-14 Identities = 191/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || |||||||| ||||| | ||| |||||||| || |||| |||||||| | Sbjct 316 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 259 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | || |||||||||||||||||||| || | ||| Sbjct 258 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACATAATG 199 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| | || ||||| | |||| || | | || ||||| | Sbjct 198 CAGGG--CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 141 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| ||||||||| | | |||| ||| || ||| || || |||| Sbjct 140 CCACAAACAGCTCCACAAACTCCGAAGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 81 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | |||| ||| || || || || ||||| || ||||| || Sbjct 80 CAGCAACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGG 41 >seq229824 Length=340 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || | || || || || || || || ||||||||||| || |||| Sbjct 99 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTC 158 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| ||||| ||||| |||||| Sbjct 159 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAG 218 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || |||||| Sbjct 219 TTGATCTCGCGAGATGAAGGCCTCCAC 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615885354535520