Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq37849 120 4e-22
seq620679 93.3 5e-14
seq21555 91.5 2e-13
seq229824 84.2 3e-11
>seq37849
Length=6260
Score = 120 bits (132), Expect = 4e-22
Identities = 231/337 (69%), Gaps = 8/337 (2%)
Strand=Plus/Minus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
|||||| ||||| | | || || || || | |||| ||||| || | | |||||
Sbjct 3983 ATCAAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 3924
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
||||||||| ||||||||||| || |||| || ||||| | ||||||||| ||
Sbjct 3923 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 3867
Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
|||| |||| | | ||| ||| || |||||||| ||||||| || ||||| ||
Sbjct 3866 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 3807
Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460
||| |||||| || | | ||| ||||| || || | || || ||||||||
Sbjct 3806 AGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 3747
Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519
|||||| || ||||| | | | | | || | || || || ||| || |||||| |
Sbjct 3746 AAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 3688
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|||| || || || |||||||| || || |||||
Sbjct 3687 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 3651
>seq620679
Length=2600
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/198 (71%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| || |||||||| || || | || || |||||| || || ||||| | ||
Sbjct 1767 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 1826
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
||||| || | |||| | || |||||||| ||| ||||||||||| || ||||| ||
Sbjct 1827 GCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 1886
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462
|| || || | | ||||| ||||| | |||| | ||| | ||||||||
Sbjct 1887 GGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCATTTCAGG 1941
Query 117463 GCCCATTTCGCCTTCTTC 117480
||||| | |||||| |||
Sbjct 1942 GCCCACTGCGCCTTTTTC 1959
>seq21555
Length=2254
Score = 91.5 bits (100), Expect = 2e-13
Identities = 216/319 (68%), Gaps = 8/319 (3%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| || |||||||| ||||| | || |||||||| || |||| |||||||| |
Sbjct 316 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 259
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | ||| || || | | ||| | || |||||||||||||||||||| || | |||
Sbjct 258 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACATAATG 199
Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457
|| || | ||| | ||| | ||||| | || | || || || ||||| ||
Sbjct 198 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTCC 140
Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517
||||||| ||||||||| | | |||| ||| || ||| || || |||||
Sbjct 139 CACAAACAGCTCCACAAACTCCGAAGCGGCACACGAGAAGAACGGCGTGCCAGCCTCACC 80
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577
|||| ||| || || || || ||||| || ||||| || ||| | || | | ||||
Sbjct 79 AGCAACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCA-GACACC 21
Query 9578 CCGT-GGAATCTTGGCGCC 9595
| | |||||||| || ||
Sbjct 20 CTTTGGGAATCTTAGCTCC 2
>seq229824
Length=340
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/198 (70%), Gaps = 7/198 (4%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| || |||||||| || || | || || ||||| || || ||||| | ||
Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
||||| || | |||| | || |||||||| ||| ||||||||||| || ||||| ||
Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462
|| || || | | ||||| ||||| | ||| | ||| | ||||||||
Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGAGCC-----GTCGATCCATTTCAGG 71
Query 117463 GCCCATTTCGCCTTCTTC 117480
||||| | |||||| |||
Sbjct 70 GCCCACTGCGCCTTTTTC 53
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 585364450981840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |