Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq37849 120 4e-22 seq620679 93.3 5e-14 seq21555 91.5 2e-13 seq229824 84.2 3e-11 >seq37849 Length=6260 Score = 120 bits (132), Expect = 4e-22 Identities = 231/337 (69%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 3983 ATCAAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 3924 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 3923 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 3867 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | ||| ||| || |||||||| ||||||| || ||||| || Sbjct 3866 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 3807 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| |||||| || | | ||| ||||| || || | || || |||||||| Sbjct 3806 AGGTGCATTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 3747 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | | | | | || | || || || ||| || |||||| | Sbjct 3746 AAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 3688 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || || || |||||||| || || ||||| Sbjct 3687 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 3651 >seq620679 Length=2600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || |||||||| || || | || || |||||| || || ||||| | || Sbjct 1767 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 1826 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || |||||||| ||| ||||||||||| || ||||| || Sbjct 1827 GCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 1886 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | | ||||| ||||| | |||| | ||| | |||||||| Sbjct 1887 GGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCATTTCAGG 1941 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | |||||| ||| Sbjct 1942 GCCCACTGCGCCTTTTTC 1959 >seq21555 Length=2254 Score = 91.5 bits (100), Expect = 2e-13 Identities = 216/319 (68%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || |||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 316 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 259 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | ||| | || |||||||||||||||||||| || | ||| Sbjct 258 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACATAATG 199 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | ||| | ||||| | || | || || || ||||| || Sbjct 198 CA-GGGCGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTCC 140 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||||||||| | | |||| ||| || ||| || || ||||| Sbjct 139 CACAAACAGCTCCACAAACTCCGAAGCGGCACACGAGAAGAACGGCGTGCCAGCCTCACC 80 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 |||| ||| || || || || ||||| || ||||| || ||| | || | | |||| Sbjct 79 AGCAACGGCACGCGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCA-GACACC 21 Query 9578 CCGT-GGAATCTTGGCGCC 9595 | | |||||||| || || Sbjct 20 CTTTGGGAATCTTAGCTCC 2 >seq229824 Length=340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || |||||||| || || | || || ||||| || || ||||| | || Sbjct 245 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCC 186 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || |||||||| ||| ||||||||||| || ||||| || Sbjct 185 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCA 126 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | | ||||| ||||| | ||| | ||| | |||||||| Sbjct 125 GGCGAAGGCCACGATCCGCTCCGCGAAAGTCTCGGAGCC-----GTCGATCCATTTCAGG 71 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | |||||| ||| Sbjct 70 GCCCACTGCGCCTTTTTC 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585364450981840