Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq39735 233 2e-56 seq32757 163 3e-35 >seq39735 Length=4112 Score = 233 bits (258), Expect = 2e-56 Identities = 258/344 (75%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 180138 TATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGT 180197 ||||| ||||| || || || || ||||| | ||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 180198 TCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTC 180257 || ||||||| ||||| || || || ||||| || ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 180258 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTC 180317 ||||| |||||||||||||| |||||||| || |||||||| || || || ||||| || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 180318 GGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAA 180377 |||||||| || ||| || ||||| ||||| |||| |||||| || | | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 180378 ACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTAC 180437 ||||| |||| ||| || || | ||||||| || |||||||| ||||| ||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 180438 AACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCA 180481 || ||||| || || ||||| || || || || |||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 163 bits (180), Expect = 3e-35 Identities = 229/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 179850 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 179909 || ||||| ||||| || || || || || ||||| || |||||||| || |||| || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 179910 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGT 179969 | | || || ||||| || || || ||||| || | ||| |||| || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 179970 CTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGT 180029 | ||||| || || || |||||||| || || |||| || ||| | || |||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 180030 CCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAG 180089 |||| | || | || | |||||| | |||| | | ||| |||||||||||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAG 3949 Query 180090 TGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCC 180148 ||||||||| || || ||||||||||||| ||||| ||| || |||||||| ||||| Sbjct 3950 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCC 4008 Query 180149 AGTCGCTGCAGCATCTGCT 180167 || || || || ||||| Sbjct 4009 TGTTGCAGCTGCTACTGCT 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605620704458640