Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq39735 196 6e-45 seq32757 149 7e-31 seq430103 118 1e-21 seq12700 111 2e-19 seq571077 91.5 2e-13 >seq39735 Length=4112 Score = 196 bits (216), Expect = 6e-45 Identities = 249/344 (72%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 169792 TACTCTGCACCAGTATCTGCTGCNNNNGCTGTATTCTTAGTATACCCATTTGGTCAGGGT 169851 || || || || || | ||||| ||| | ||||| | |||||| ||||||| || Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 169852 TCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTC 169911 || ||||| |||||||| ||||| ||||| |||||||||||||| ||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 169912 CAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTC 169971 ||||| ||||| ||||| || ||||| || || |||||| ||| || || || | || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 169972 GGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAA 170031 || || || ||||| || ||||||||||| | || || || | | ||||| ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 170032 ACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATAC 170091 || ||||| | || || || | ||||| | ||||| ||||| |||||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 170092 AACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCA 170135 || || ||||| || || ||||| ||||| || | |||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 149 bits (164), Expect = 7e-31 Identities = 241/344 (70%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 169472 GCTTACTCACAGCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 169530 |||| ||| ||||| | |||| || || |||| |||||||| |||||||| || ||| Sbjct 3678 GCTTCCTCTCAGCATC-GCATTCATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGAT 3736 Query 169531 ATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCT 169590 || || || || | ||||| || | || ||||| | || || ||||| || || || Sbjct 3737 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCC 3796 Query 169591 GGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCA 169650 ||||| || | || | || ||||| || | ||||| |||||||| |||||||| Sbjct 3797 GGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCG 3856 Query 169651 GCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTC 169710 || |||||||||||||||| || || ||||| |||||| || | | | | |||||| Sbjct 3857 GCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTC 3916 Query 169711 CTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATG 169770 | ||||| | | || ||||| | |||||||||| | | | | || ||| Sbjct 3917 TTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 3976 Query 169771 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGC 169814 || |||||||| ||||||||| || || || || | ||||| Sbjct 3977 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 4020 >seq430103 Length=1767 Score = 118 bits (130), Expect = 1e-21 Identities = 175/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||||| ||| ||||||| || ||| ||| ||||||||| | || ||||| Sbjct 175 GGTGAGTTGGGGGCGGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCGATGGGG 234 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 ||||||||||||||||| |||||| | || ||| | | |||| ||||| | ||| ||| Sbjct 235 TATGGAGGTCCTCATGCAGCATTCCTGGCCACATCTCAGGAGTACAAGAGGATGATGCCT 294 Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909 || |||||| | | || ||| || ||| | || || ||| | | || Sbjct 295 GGAAGAATTATTGGTGTAAGT--GTTGATTCTTCGGGGAAGCCTGCACTGCGTATGGCCA 352 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | ||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||| |||| Sbjct 353 TGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGCTACCAGCAACATTTGCACTGCTC 412 Query 153970 AGGCAC 153975 ||| || Sbjct 413 AGGTAC 418 >seq12700 Length=3267 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 153767 GCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 153826 ||| ||||||||| | || ||||| ||||||||||||||||| ||||| | || ||| | Sbjct 2402 GCAGAGGTTTGGTGTGCCAATGGGGTATGGAGGTCCTCATGCAGCATTTCTGGCCACATC 2461 Query 153827 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGG 153886 | |||| ||||| | ||| ||||| |||||| | ||| | || ||| | || Sbjct 2462 TCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGTGTGAGTGTTGATTCTTCGGG 2521 Query 153887 TAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGC 153946 || ||| | | || | ||||| || ||||| |||||||| || ||||| || Sbjct 2522 GAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGC 2581 Query 153947 AACCAGTAACATCTGCACAGCTCAGGCAC 153975 ||||| ||||| ||||| ||||||| || Sbjct 2582 TACCAGCAACATTTGCACTGCTCAGGTAC 2610 >seq571077 Length=308 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||||| ||| ||||||| || ||| ||| ||||||||| | || ||||| Sbjct 138 GGTGAGTTGGGGGCGGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCGATGGGG 197 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 ||||||||||||||||| |||||| | || ||| | | |||| ||||| | ||| ||| Sbjct 198 TATGGAGGTCCTCATGCAGCATTCCTGGCCACATCGCAGGAGTACAAGAGGATGATGCCT 257 Query 153852 GGCAGAATTGTAGGT 153866 || |||||| | ||| Sbjct 258 GGAAGAATTATTGGT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574680706005440