Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 196 6e-45
seq32757 149 7e-31
seq430103 118 1e-21
seq12700 111 2e-19
seq571077 91.5 2e-13
>seq39735
Length=4112
Score = 196 bits (216), Expect = 6e-45
Identities = 249/344 (72%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 169792 TACTCTGCACCAGTATCTGCTGCNNNNGCTGTATTCTTAGTATACCCATTTGGTCAGGGT 169851
|| || || || || | ||||| ||| | ||||| | |||||| ||||||| ||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 169852 TCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTC 169911
|| ||||| |||||||| ||||| ||||| |||||||||||||| ||| | || |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 169912 CAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTC 169971
||||| ||||| ||||| || ||||| || || |||||| ||| || || || | ||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 169972 GGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAA 170031
|| || || ||||| || ||||||||||| | || || || | | ||||| |||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 170032 ACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATAC 170091
|| ||||| | || || || | ||||| | ||||| ||||| |||||||| ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 170092 AACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCA 170135
|| || ||||| || || ||||| ||||| || | ||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983
>seq32757
Length=9777
Score = 149 bits (164), Expect = 7e-31
Identities = 241/344 (70%), Gaps = 2/344 (1%)
Strand=Plus/Plus
Query 169472 GCTTACTCACAGCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCACCTCCTGTCGAT 169530
|||| ||| ||||| | |||| || || |||| |||||||| |||||||| || |||
Sbjct 3678 GCTTCCTCTCAGCATC-GCATTCATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGAT 3736
Query 169531 ATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCT 169590
|| || || || | ||||| || | || ||||| | || || ||||| || || ||
Sbjct 3737 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCC 3796
Query 169591 GGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCA 169650
||||| || | || | || ||||| || | ||||| |||||||| ||||||||
Sbjct 3797 GGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCG 3856
Query 169651 GCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTC 169710
|| |||||||||||||||| || || ||||| |||||| || | | | | ||||||
Sbjct 3857 GCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTC 3916
Query 169711 CTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATG 169770
| ||||| | | || ||||| | |||||||||| | | | | || |||
Sbjct 3917 TTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 3976
Query 169771 CGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGC 169814
|| |||||||| ||||||||| || || || || | |||||
Sbjct 3977 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 4020
>seq430103
Length=1767
Score = 118 bits (130), Expect = 1e-21
Identities = 175/246 (71%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791
||||||| ||| ||||||| || ||| ||| ||||||||| | || |||||
Sbjct 175 GGTGAGTTGGGGGCGGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCGATGGGG 234
Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851
||||||||||||||||| |||||| | || ||| | | |||| ||||| | ||| |||
Sbjct 235 TATGGAGGTCCTCATGCAGCATTCCTGGCCACATCTCAGGAGTACAAGAGGATGATGCCT 294
Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909
|| |||||| | | || ||| || ||| | || || ||| | | ||
Sbjct 295 GGAAGAATTATTGGTGTAAGT--GTTGATTCTTCGGGGAAGCCTGCACTGCGTATGGCCA 352
Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969
| ||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||| ||||
Sbjct 353 TGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGCTACCAGCAACATTTGCACTGCTC 412
Query 153970 AGGCAC 153975
||| ||
Sbjct 413 AGGTAC 418
>seq12700
Length=3267
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 153767 GCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 153826
||| ||||||||| | || ||||| ||||||||||||||||| ||||| | || ||| |
Sbjct 2402 GCAGAGGTTTGGTGTGCCAATGGGGTATGGAGGTCCTCATGCAGCATTTCTGGCCACATC 2461
Query 153827 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGG 153886
| |||| ||||| | ||| ||||| |||||| | ||| | || ||| | ||
Sbjct 2462 TCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGTGTGAGTGTTGATTCTTCGGG 2521
Query 153887 TAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGC 153946
|| ||| | | || | ||||| || ||||| |||||||| || ||||| ||
Sbjct 2522 GAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGC 2581
Query 153947 AACCAGTAACATCTGCACAGCTCAGGCAC 153975
||||| ||||| ||||| ||||||| ||
Sbjct 2582 TACCAGCAACATTTGCACTGCTCAGGTAC 2610
>seq571077
Length=308
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791
||||||| ||| ||||||| || ||| ||| ||||||||| | || |||||
Sbjct 138 GGTGAGTTGGGGGCGGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCGATGGGG 197
Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851
||||||||||||||||| |||||| | || ||| | | |||| ||||| | ||| |||
Sbjct 198 TATGGAGGTCCTCATGCAGCATTCCTGGCCACATCGCAGGAGTACAAGAGGATGATGCCT 257
Query 153852 GGCAGAATTGTAGGT 153866
|| |||||| | |||
Sbjct 258 GGAAGAATTATTGGT 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574680706005440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |