Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq39735 257 2e-63 seq32757 185 1e-41 seq455362 84.2 2e-11 >seq39735 Length=4112 Score = 257 bits (284), Expect = 2e-63 Identities = 264/345 (77%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 164175 TACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGT 164234 || || || || |||||||| || | || | ||| || |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 164235 TCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTC 164294 || ||||||| ||||| || || |||||||| || ||||||| |||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 164295 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTT 164354 ||||| |||||||||||||| |||||||| || || ||||| || || ||||| |||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 164355 GGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAA 164414 |||||||| || |||||||| ||||| |||||| |||| || ||| || | | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 164415 ACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATAC 164474 ||||| |||| ||| || || | ||||||| || |||||||| |||||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 164475 AACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAA 164519 || || || |||||||| ||||| ||||| || ||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 185 bits (204), Expect = 1e-41 Identities = 231/313 (74%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 163887 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCG 163946 || ||| | ||||| || || || || || ||||||||||||||||||||| | || || Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 163947 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGT 164006 | | || || ||||| || || || ||||| || | || | || || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 164007 CTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGT 164066 | ||||| ||||| || |||||||| || || ||||||||||| | ||||||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 164067 CCTTTCCAACTTGTCGTCTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTG 164124 |||| | || | || | |||||| | | | ||| || ||| || |||||||||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947 Query 164125 AGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCAC 164184 |||||||||| || |||||| |||||||| ||||||||| |||||| || || || | Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007 Query 164185 CCGTTGCAGCAGC 164197 | |||||||| || Sbjct 4008 CTGTTGCAGCTGC 4020 >seq455362 Length=6327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACC 163871 || || || || |||| ||||| | ||| ||||||||||||| | | | ||||| Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 814 Query 163872 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 ||||| || || | || ||| | ||||| || || || || || |||||||||||||| Sbjct 813 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 755 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGC 163978 ||||||| | || || | | || || ||||| || || || ||||| Sbjct 754 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552567100133040