Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq39735 242 4e-59 seq32757 152 6e-32 seq455362 91.5 2e-13 >seq39735 Length=4112 Score = 242 bits (268), Expect = 4e-59 Identities = 260/344 (76%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 168881 TATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGT 168940 |||||||| || || | || || ||| | ||| | | |||||| ||||||| || Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 168941 TCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTC 169000 || ||||| ||||||||||||||||| ||||| || |||||||||||| | |||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 169001 CAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTC 169060 ||||| ||||||||||| |||||||| || || || ||| ||| || || ||| | || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 169061 GGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAG 169120 || || || |||||| || ||||||||||| | ||||| ||| | | ||||| || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 169121 ACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTAT 169180 || || || | |||||| || | ||||||| ||||||||||| |||||||||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 169181 AATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCA 169224 ||||| || || || ||||| || || || |||| |||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 152 bits (168), Expect = 6e-32 Identities = 226/320 (71%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || ||| |||| || ||||||||||| || || ||||| || || || | |||||||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 | || || || | || |||||||| || || || ||||| || | || |||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATAT 168763 || || ||| | ||||| |||||||| |||||||| ||| | | ||||| |||||||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATG 168823 || ||||| ||||| || | | | | |||||| || | || | || ||| ||| Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 168824 GGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTAT 168883 ||| | |||||||| | | | | || |||||| | |||||||| |||||| ||| Sbjct 3941 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 4000 Query 168884 TCAGCACCAGTATCTGCAGC 168903 ||||| || || |||||| Sbjct 4001 TCAGCTCCTGT---TGCAGC 4017 >seq455362 Length=6327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 168524 CTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT 168583 ||||| |||| ||||| |||| || |||||||| |||||| || ||| | | ||| Sbjct 867 CTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGT 809 Query 168584 -TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGT 168642 || ||| |||| || ||||||||||| || || ||||| || || || | |||||||| Sbjct 808 ATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGT 749 Query 168643 AGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGC 168684 | || || || | || |||||||| || || || ||||| Sbjct 748 TTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560025084367680