Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq32757 154 2e-32
seq619606 104 3e-17
seq430103 100 3e-16
seq571077 82.4 9e-11
>seq32757
Length=9777
Score = 154 bits (170), Expect = 2e-32
Identities = 251/359 (70%), Gaps = 2/359 (1%)
Strand=Plus/Plus
Query 171892 TTGCTCACAGCAGCAGCATGC-TTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATAT 171950
|| ||| ||||| | |||| | || || |||| |||||||| |||||||| || |||||
Sbjct 3680 TTCCTCTCAGCATC-GCATTCATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATAT 3738
Query 171951 CGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGG 172010
|| || || | ||||| ||| | || ||||| | || || ||||| || || || ||
Sbjct 3739 TGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGG 3798
Query 172011 TGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGC 172070
||| || | || | || || |||||| | ||||| ||||| || |||||||| ||
Sbjct 3799 TGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGC 3858
Query 172071 AACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCT 172130
| || ||||||||||| ||||| ||||| |||||| || | | | | |||||| |
Sbjct 3859 TTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTT 3918
Query 172131 TATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAG 172190
| ||| | | || ||||| | |||||||||| | | | | |||||| |
Sbjct 3919 ACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCG 3978
Query 172191 ACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTG 172249
|| ||||| ||| ||||||||||| ||||| |||| || |||| ||| | |||
Sbjct 3979 CCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTCTGTGCTTTG 4037
>seq619606
Length=1000
Score = 104 bits (114), Expect = 3e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722
|||||| ||||| ||| ||| || ||| || ||||| || ||||| ||| | ||
Sbjct 122 ACAGGTGGGTCTGACAAGCCCAGGTTGGATTGGAGCTGATGTCTGCCATCTCAACCTCCA 181
Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779
||||||||| || |||||||| |||||||| ||||||||| | ||||||||||||||
Sbjct 182 TAAGACATTTTGCATTCCACACGGAGGTGGTGGTCCTGGCATGGGTCCTATTGGTGT 238
>seq430103
Length=1767
Score = 100 bits (110), Expect = 3e-16
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 158442 GCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 158501
||| ||||||||| | || ||||| || |||||||||||||| |||||| | || ||| |
Sbjct 210 GCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCATGCAGCATTCCTGGCCACATC 269
Query 158502 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAA 158559
| |||| ||||| | ||| ||||| |||||| | | || ||| || |||
Sbjct 270 TCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGTGTAAGT--GTTGATTCTTCG 327
Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619
|| || ||| | | || | ||||| || ||||| ||||||||||| |||||
Sbjct 328 GGGAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGCAACATATCAGAAGGGACAAG 387
Query 158620 GCAACCAGTAACATCTGCACAGCACA 158645
|| ||||| ||||| ||||| || ||
Sbjct 388 GCTACCAGCAACATTTGCACTGCTCA 413
>seq571077
Length=308
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 158442 GCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 158501
||| ||||||||| | || ||||| || |||||||||||||| |||||| | || ||| |
Sbjct 173 GCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCATGCAGCATTCCTGGCCACATC 232
Query 158502 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541
| |||| ||||| | ||| ||||| |||||| | |||
Sbjct 233 GCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGT 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583449949281760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |