Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq32757 154 2e-32 seq619606 104 3e-17 seq430103 100 3e-16 seq571077 82.4 9e-11 >seq32757 Length=9777 Score = 154 bits (170), Expect = 2e-32 Identities = 251/359 (70%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 171892 TTGCTCACAGCAGCAGCATGC-TTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATAT 171950 || ||| ||||| | |||| | || || |||| |||||||| |||||||| || ||||| Sbjct 3680 TTCCTCTCAGCATC-GCATTCATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATAT 3738 Query 171951 CGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGG 172010 || || || | ||||| ||| | || ||||| | || || ||||| || || || || Sbjct 3739 TGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGG 3798 Query 172011 TGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGC 172070 ||| || | || | || || |||||| | ||||| ||||| || |||||||| || Sbjct 3799 TGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGC 3858 Query 172071 AACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCT 172130 | || ||||||||||| ||||| ||||| |||||| || | | | | |||||| | Sbjct 3859 TTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTT 3918 Query 172131 TATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAG 172190 | ||| | | || ||||| | |||||||||| | | | | |||||| | Sbjct 3919 ACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCG 3978 Query 172191 ACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTG 172249 || ||||| ||| ||||||||||| ||||| |||| || |||| ||| | ||| Sbjct 3979 CCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTCTGTGCTTTG 4037 >seq619606 Length=1000 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| ||||| ||| ||| || ||| || ||||| || ||||| ||| | || Sbjct 122 ACAGGTGGGTCTGACAAGCCCAGGTTGGATTGGAGCTGATGTCTGCCATCTCAACCTCCA 181 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| || |||||||| |||||||| ||||||||| | |||||||||||||| Sbjct 182 TAAGACATTTTGCATTCCACACGGAGGTGGTGGTCCTGGCATGGGTCCTATTGGTGT 238 >seq430103 Length=1767 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 158442 GCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 158501 ||| ||||||||| | || ||||| || |||||||||||||| |||||| | || ||| | Sbjct 210 GCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCATGCAGCATTCCTGGCCACATC 269 Query 158502 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAA 158559 | |||| ||||| | ||| ||||| |||||| | | || ||| || ||| Sbjct 270 TCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGTGTAAGT--GTTGATTCTTCG 327 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || || ||| | | || | ||||| || ||||| ||||||||||| ||||| Sbjct 328 GGGAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGCAACATATCAGAAGGGACAAG 387 Query 158620 GCAACCAGTAACATCTGCACAGCACA 158645 || ||||| ||||| ||||| || || Sbjct 388 GCTACCAGCAACATTTGCACTGCTCA 413 >seq571077 Length=308 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 158442 GCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 158501 ||| ||||||||| | || ||||| || |||||||||||||| |||||| | || ||| | Sbjct 173 GCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCATGCAGCATTCCTGGCCACATC 232 Query 158502 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 | |||| ||||| | ||| ||||| |||||| | ||| Sbjct 233 GCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGT 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583449949281760