Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq39735 271 8e-68 seq32757 179 4e-40 seq455362 95.1 1e-14 seq17198 84.2 2e-11 >seq39735 Length=4112 Score = 271 bits (300), Expect = 8e-68 Identities = 267/345 (77%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 167478 TACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGT 167537 || || ||||| || || || || ||||| | ||| | |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 167538 TCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTC 167597 || ||||||| |||||||| || ||||||||||| ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 167598 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTC 167657 ||||| |||||||||||||| |||||||| || || ||||| || || ||||| ||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 167658 GGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAA 167717 |||||||| || |||||||| ||||| |||||| |||| |||||| || | | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 167718 ACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTAT 167777 ||||| |||| ||| || || | ||||||| |||||||| || ||||| || ||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 167778 AACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAA 167822 || ||||| || ||||||||||| || || || ||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 179 bits (198), Expect = 4e-40 Identities = 236/327 (72%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 167181 TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTT 167240 || || || || ||| | | ||| ||||| || || || |||||||| || ||||| ||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 167241 GCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAAT 167300 |||| || | | || || ||||| || || || ||||| || | ||| ||||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 167301 GCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTAC 167360 ||||| ||| | ||||| || || || |||||||| || | | || || ||||| ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 167361 AATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATG 167420 || ||||| |||| | || | ||| | |||||| | |||| | | ||||||| Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 167421 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 167480 ||||||||||||||||| || |||||| |||||||| || ||||| ||||||||| Sbjct 3941 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 4000 Query 167481 TCTGCTCCAGTCGCTGCAGCATCTGCT 167507 || ||||| || || || || ||||| Sbjct 4001 TCAGCTCCTGTTGCAGCTGCTACTGCT 4027 >seq455362 Length=6327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 167115 AACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACC 167174 || ||||| || | || ||||| | ||| ||||||||||||| || | | |||| | Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAA-C 815 Query 167175 ATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGA 167233 ||||| || || || || ||| | | ||| ||||| || || || |||||||| || || Sbjct 814 TTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 755 Query 167234 ACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 167293 ||| ||| |||| || | | || || ||||| || || || ||||| || | ||| | Sbjct 754 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTAC 695 Query 167294 TTCTAATGCTATTGGT 167309 |||| ||||| ||| Sbjct 694 TTCTGCAGCTATAGGT 679 >seq17198 Length=13135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 22402 GCCCTTATAGCTCAGTGGTAGAGCAACGCTTTTGTAAAGCGTAGGTCGTTGGTTCAAATC 22461 |||||| || ||||||||||||| ||||| | |||| ||||| ||| |||||||||||| Sbjct 1392 GCCCTTTTAACTCAGTGGTAGAGTAACGCCATGGTAAGGCGTAAGTCATTGGTTCAAATC 1333 Query 22462 CGACTGGGGGCTTTGG 22477 ||| |||||||||| Sbjct 1332 CGATAAGGGGCTTTGG 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556221480658400