Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 235 8e-57
seq32757 145 1e-29
>seq39735
Length=4112
Score = 235 bits (260), Expect = 8e-57
Identities = 259/345 (75%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 215684 TACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGT 215743
|| || || ||||| | ||||| ||| | ||| | | || ||| | ||||| ||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 215744 TCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTC 215803
|| ||||| | |||||| || ||||||||||| || ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 215804 CAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTC 215863
|| |||||||||||||| || ||||||||||| |||||| |||||||||||||||| ||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 215864 GGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAG 215923
|| ||||| | ||| ||| ||||| ||||| | || || ||| | | ||||| ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 215924 ACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATAC 215983
|| || || | |||||| || | ||||||| ||||| |||||||| ||||| ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 215984 AACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAA 216028
|| |||||||| || || ||||| ||||| || | |||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 145 bits (160), Expect = 1e-29
Identities = 223/313 (71%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455
|| ||||| ||||||||||| || ||||| || || || | || || ||| |||| |||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515
||| | || || ||||| || || || ||||| || | |||| ||| || || ||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575
|| ||||| ||||| || |||||||| || | ||||| |||||| | ||||| |||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTC-TGC-ATACTGCGGAAGAC 215633
|||| | || || | | |||||| | ||||| | | ||| ||| || || |
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATA-TG-GGTCGTG 3947
Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693
||||||||||| || | | | |||||| | |||||||| |||||| || || || |
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 215694 CTGTATCTGCTGC 215706
|||| | |||||
Sbjct 4008 CTGTTGCAGCTGC 4020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739251653139680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |