Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq39735 230 3e-55 seq32757 170 2e-37 >seq39735 Length=4112 Score = 230 bits (254), Expect = 3e-55 Identities = 258/345 (75%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 182184 TACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGT 182243 || || ||||| || || || || ||||| | ||||| |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 182244 TCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTC 182303 || || || | ||||| || |||||||| || || ||||||| ||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 182304 CAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTC 182363 ||||||||||||||||| |||||||| || || |||||| | ||||| || |||||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 182364 GGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAG 182423 || ||||| || || ||||| ||||| ||||||||||| || ||| | || | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 182424 ACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAT 182483 || || || | || || || | ||||||| ||||||||||| ||||| |||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 182484 AACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAA 182528 || ||||| || || ||||| || || || || |||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 170 bits (188), Expect = 2e-37 Identities = 238/331 (72%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 181894 TTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTT 181953 |||||||| | || |||||||| || ||||| || ||||| || ||||| || |||| | Sbjct 3708 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 3767 Query 181954 CACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTG 182013 | | | || || ||||| || || || ||||| || |||| | || || || | Sbjct 3768 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 3827 Query 182014 GTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTG 182073 || | ||||| |||||||| |||||||| || || ||||||| ||| | || ||||||| Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887 Query 182074 GTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGAC 182130 | |||| | || ||||| | |||||| | | || | || || ||| ||||| | Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGCTATATGGGTC 3944 Query 182131 GTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTG 182190 |||||||||||||| || ||| | |||||||| || ||||| ||| ||||| || | Sbjct 3945 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAG 4004 Query 182191 CTCCAGTCGCTGCAGCATCTGCTGTATTCTT 182221 |||| || || || || ||||| | | ||| Sbjct 4005 CTCCTGTTGCAGCTGCTACTGCTCTGTGCTT 4035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606909738770800