Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 230 3e-55
seq32757 170 2e-37
>seq39735
Length=4112
Score = 230 bits (254), Expect = 3e-55
Identities = 258/345 (75%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 182184 TACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGT 182243
|| || ||||| || || || || ||||| | ||||| |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 182244 TCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTC 182303
|| || || | ||||| || |||||||| || || ||||||| ||| | || |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 182304 CAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTC 182363
||||||||||||||||| |||||||| || || |||||| | ||||| || ||||||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 182364 GGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAG 182423
|| ||||| || || ||||| ||||| ||||||||||| || ||| | || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 182424 ACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAT 182483
|| || || | || || || | ||||||| ||||||||||| ||||| ||||||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 182484 AACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAA 182528
|| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 170 bits (188), Expect = 2e-37
Identities = 238/331 (72%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 181894 TTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTT 181953
|||||||| | || |||||||| || ||||| || ||||| || ||||| || |||| |
Sbjct 3708 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 3767
Query 181954 CACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTG 182013
| | | || || ||||| || || || ||||| || |||| | || || || |
Sbjct 3768 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 3827
Query 182014 GTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTG 182073
|| | ||||| |||||||| |||||||| || || ||||||| ||| | || |||||||
Sbjct 3828 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 3887
Query 182074 GTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGAC 182130
| |||| | || ||||| | |||||| | | || | || || ||| ||||| |
Sbjct 3888 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGCTATATGGGTC 3944
Query 182131 GTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTG 182190
|||||||||||||| || ||| | |||||||| || ||||| ||| ||||| || |
Sbjct 3945 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAG 4004
Query 182191 CTCCAGTCGCTGCAGCATCTGCTGTATTCTT 182221
|||| || || || || ||||| | | |||
Sbjct 4005 CTCCTGTTGCAGCTGCTACTGCTCTGTGCTT 4035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 606909738770800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |