Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq32757 232 7e-56 seq39735 192 7e-44 seq455362 114 1e-20 >seq32757 Length=9777 Score = 232 bits (256), Expect = 7e-56 Identities = 244/321 (76%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| ||| ||||| ||||| || || || || ||||||||||||||||||||||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 | || ||| || | ||||| ||||| || || || ||||| | | || ||||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 || || || | ||||| || || || |||||||| || | | ||||||||||| ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 |||||||| ||||| || | |||| | |||||| | | |||||||||||||| ||| Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || ||| || |||||||| ||||||||| || |||||| Sbjct 3941 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 4000 Query 165157 AGCGCACCTGTCGCTGCTGCT 165177 || ||||| || |||||| Sbjct 4001 TCAGCTCCTGTTGCAGCTGCT 4021 >seq39735 Length=4112 Score = 192 bits (212), Expect = 7e-44 Identities = 246/339 (73%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 165160 GCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTC 165219 || ||||| || |||||| | || ||||| || |||| || | |||||||| || || Sbjct 1646 GCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTT 1705 Query 165220 TCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCA 165279 ||||| ||||||||||| || |||||||||||||| |||| ||| | || |||||||| Sbjct 1706 TCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCT 1765 Query 165280 GAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGA 165339 || || ||||| |||||||| || || |||||||| || || ||||| ||||| || || Sbjct 1766 GAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGT 1825 Query 165340 TCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACT 165399 || || ||| |||||||||||| | | || || || | || | || || || Sbjct 1826 TCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 1885 Query 165400 GAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATC 165459 |||| || | || | ||||| | || || ||||| ||||| |||||||| ||| Sbjct 1886 GAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATC 1945 Query 165460 GTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAA 165498 || || || || || || || || || | || |||||| Sbjct 1946 GTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq455362 Length=6327 Score = 114 bits (126), Expect = 1e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 164787 CAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGC 164846 || ||| |||||||| | || ||||| ||||| | |||||||| ||| | |||| Sbjct 877 CAGTAAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGC 818 Query 164847 TACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTC 164905 || | ||| ||||||| ||| ||||| ||||| || || || || ||||||||||||| Sbjct 817 AACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTC 759 Query 164906 GTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGC 164957 |||||||||| | || ||| || | ||||| ||||| || || || ||||| Sbjct 758 GTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559250393795840