Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq39735 217 2e-51 >seq39735 Length=4112 Score = 217 bits (240), Expect = 2e-51 Identities = 255/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 170080 TATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGA 170139 ||||| ||||| || |||| || ||| | ||||| | || || | ||||| ||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 170140 TCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTC 170199 || || ||||| ||||||||||| ||||| ||||| || ||||||||| | |||||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 170200 CAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTC 170259 ||||| ||||||||||| |||||||||||||| || ||| ||| || |||||| | || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 170260 GGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAG 170319 || || | || ||| || ||||| ||||| | ||||| ||| | | ||||| || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 170320 ACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATAC 170379 || ||||| || || || || | || |||| |||||| ||||| |||||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 170380 AACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAA 170424 || || || || || ||||| || ||||| || | ||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578287462110400