Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq39735 224 1e-53 seq32757 201 1e-46 seq455362 100 3e-16 >seq39735 Length=4112 Score = 224 bits (248), Expect = 1e-53 Identities = 256/344 (74%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 84222 TGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCT 84281 |||||||| | || || || || || ||||| || || |||||||| ||||| || ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 84282 TGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAA 84341 |||||||| ||||||| | || || |||||||||| ||||| | ||| | | | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 84342 GAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACT 84401 || || || | ||||||||||| ||| |||||| | || || ||||||||||| || Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461 || | ||||||||| || |||||||||||||| || || || ||||| |||| |||| || Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGA 84521 ||||| || || ||||| || || ||||| || ||||| || ||||| || | || Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 84522 TACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTA 84565 || | | ||| | ||||| || |||||||| ||||| || || Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 201 bits (222), Expect = 1e-46 Identities = 243/328 (74%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 84536 AGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAG 84595 ||||| || |||||||| ||||| || || |||||| ||||| || |||||||| || Sbjct 4027 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 3968 Query 84596 ACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAA 84654 ||| | ||||||||| ||||||||||| || |||| | |||||| | |||||| | Sbjct 3967 ACGGAAACTAAGTTCCCACTCACGACCCATATA-GCAAGCTACACCAAGTAAGAAGTGTA 3909 Query 84655 AGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCC 84714 |||| || | |||||| ||||| || |||| |||||| || | | || ||||||| Sbjct 3908 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 3849 Query 84715 AAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGA 84774 | || || || || || | ||| ||||| ||| | || | | |||||| ||||| | Sbjct 3848 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 3789 Query 84775 TGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTG 84834 | ||||||||||| | | ||| |||| || || ||||| ||||| |||||||| || | Sbjct 3788 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCG 3729 Query 84835 GGGGTGCACCAACGAATGCAATGATGAA 84862 | |||||| ||| ||| ||||| || || Sbjct 3728 GAGGTGCAGCAATGAAAGCAATAATAAA 3701 >seq455362 Length=6327 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 84761 GGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACC 84820 |||||| ||||| || ||||||||||| | | ||| |||| || || ||||| ||||| Sbjct 706 GGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACC 765 Query 84821 GTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAA 84879 |||||||| || || |||||| ||| ||| ||||| || || ||||| ||| || | | Sbjct 766 ATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCA 824 Query 84880 GTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTT 84928 || ||| || ||||| | | | |||||| |||| || | ||| || Sbjct 825 ATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566803626871280