Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 224 1e-53
seq32757 201 1e-46
seq455362 100 3e-16
>seq39735
Length=4112
Score = 224 bits (248), Expect = 1e-53
Identities = 256/344 (74%), Gaps = 0/344 (0%)
Strand=Plus/Minus
Query 84222 TGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCT 84281
|||||||| | || || || || || ||||| || || |||||||| ||||| || |||
Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924
Query 84282 TGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAA 84341
|||||||| ||||||| | || || |||||||||| ||||| | ||| | | |
Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864
Query 84342 GAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACT 84401
|| || || | ||||||||||| ||| |||||| | || || ||||||||||| ||
Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804
Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461
|| | ||||||||| || |||||||||||||| || || || ||||| |||| |||| ||
Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744
Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGA 84521
||||| || || ||||| || || ||||| || ||||| || ||||| || | ||
Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684
Query 84522 TACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTA 84565
|| | | ||| | ||||| || |||||||| ||||| || ||
Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640
>seq32757
Length=9777
Score = 201 bits (222), Expect = 1e-46
Identities = 243/328 (74%), Gaps = 2/328 (1%)
Strand=Plus/Minus
Query 84536 AGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAG 84595
||||| || |||||||| ||||| || || |||||| ||||| || |||||||| ||
Sbjct 4027 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 3968
Query 84596 ACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAA 84654
||| | ||||||||| ||||||||||| || |||| | |||||| | |||||| |
Sbjct 3967 ACGGAAACTAAGTTCCCACTCACGACCCATATA-GCAAGCTACACCAAGTAAGAAGTGTA 3909
Query 84655 AGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCC 84714
|||| || | |||||| ||||| || |||| |||||| || | | || |||||||
Sbjct 3908 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 3849
Query 84715 AAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGA 84774
| || || || || || | ||| ||||| ||| | || | | |||||| ||||| |
Sbjct 3848 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 3789
Query 84775 TGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTG 84834
| ||||||||||| | | ||| |||| || || ||||| ||||| |||||||| || |
Sbjct 3788 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCG 3729
Query 84835 GGGGTGCACCAACGAATGCAATGATGAA 84862
| |||||| ||| ||| ||||| || ||
Sbjct 3728 GAGGTGCAGCAATGAAAGCAATAATAAA 3701
>seq455362
Length=6327
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 84761 GGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACC 84820
|||||| ||||| || ||||||||||| | | ||| |||| || || ||||| |||||
Sbjct 706 GGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACC 765
Query 84821 GTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAA 84879
|||||||| || || |||||| ||| ||| ||||| || || ||||| ||| || | |
Sbjct 766 ATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCA 824
Query 84880 GTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTT 84928
|| ||| || ||||| | | | |||||| |||| || | ||| ||
Sbjct 825 ATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566803626871280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |