Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq32757 152 1e-32 seq39735 150 5e-32 seq455362 96.9 1e-15 >seq32757 Length=9777 Score = 152 bits (168), Expect = 1e-32 Identities = 222/310 (72%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| |||| ||||| || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 || || || ||| | |||||||||||||| || || || || | |||| | ||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 || || || | || |||||||| || |||||||| | | | || || ||| ||||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGC-AGC-ATATG 26132 || || || || ||| | || ||| | | ||||||||| | || ||||| || ||||| Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 26133 CAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCAT 26192 || | |||||||||| || | | || || ||| | || ||||| |||||||| Sbjct 3941 --GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998 Query 26193 ATACAGCACC 26202 || |||| || Sbjct 3999 ATTCAGCTCC 4008 >seq39735 Length=4112 Score = 150 bits (166), Expect = 5e-32 Identities = 220/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284 ||||| | || || | || ||||| || ||| ||| || |||||||| || |||||| Sbjct 1673 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCT 1732 Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTC 26344 |||||||| ||||| ||| | ||||||||||| || || || || || ||||||||||| Sbjct 1733 GGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTT 1792 Query 26345 CATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGT 26404 || ||| ||||| ||||| || || || || | || ||| ||||||||| || | Sbjct 1793 CACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCT 1852 Query 26405 TTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTAT 26464 ||||| || || | || ||||| ||||| | | || ||| | || || Sbjct 1853 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 1912 Query 26465 AAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 26524 | || || ||||| ||||| || |||||||| || || || || || || ||||| || Sbjct 1913 AGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAGTTTGGCCGA 1972 Query 26525 TTAATTTTTCA 26535 || || || || Sbjct 1973 TTGATCTTCCA 1983 >seq455362 Length=6327 Score = 96.9 bits (106), Expect = 1e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCG-CAGCCAC 25887 || ||||| || | |||||||| | || | ||||| |||| ||| | | | || || Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGAT-CCCTACTTTATTGACCGCAAC 815 Query 25888 TACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTG 25946 | | ||| ||||| |||| ||||| || ||||| || |||||||| ||||| || |||| Sbjct 814 TTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTG 756 Query 25947 AGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 | || ||||| || || ||| | |||||||||||||| || || || || Sbjct 755 AACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145635731864784