Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq32757 152 1e-32
seq39735 150 5e-32
seq455362 96.9 1e-15
>seq32757
Length=9777
Score = 152 bits (168), Expect = 1e-32
Identities = 222/310 (72%), Gaps = 4/310 (1%)
Strand=Plus/Plus
Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954
||||| |||| ||||| || ||||| || |||||||| ||||| || ||||| || |||
Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760
Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014
|| || || ||| | |||||||||||||| || || || || | |||| | |||
Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820
Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074
|| || || | || |||||||| || |||||||| | | | || || ||| |||||
Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880
Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGC-AGC-ATATG 26132
|| || || || ||| | || ||| | | ||||||||| | || ||||| || |||||
Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940
Query 26133 CAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCAT 26192
|| | |||||||||| || | | || || ||| | || ||||| ||||||||
Sbjct 3941 --GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998
Query 26193 ATACAGCACC 26202
|| |||| ||
Sbjct 3999 ATTCAGCTCC 4008
>seq39735
Length=4112
Score = 150 bits (166), Expect = 5e-32
Identities = 220/311 (71%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284
||||| | || || | || ||||| || ||| ||| || |||||||| || ||||||
Sbjct 1673 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCT 1732
Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTC 26344
|||||||| ||||| ||| | ||||||||||| || || || || || |||||||||||
Sbjct 1733 GGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTT 1792
Query 26345 CATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGT 26404
|| ||| ||||| ||||| || || || || | || ||| ||||||||| || |
Sbjct 1793 CACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCT 1852
Query 26405 TTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTAT 26464
||||| || || | || ||||| ||||| | | || ||| | || ||
Sbjct 1853 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 1912
Query 26465 AAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 26524
| || || ||||| ||||| || |||||||| || || || || || || ||||| ||
Sbjct 1913 AGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAGTTTGGCCGA 1972
Query 26525 TTAATTTTTCA 26535
|| || || ||
Sbjct 1973 TTGATCTTCCA 1983
>seq455362
Length=6327
Score = 96.9 bits (106), Expect = 1e-15
Identities = 126/169 (75%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCG-CAGCCAC 25887
|| ||||| || | |||||||| | || | ||||| |||| ||| | | | || ||
Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGAT-CCCTACTTTATTGACCGCAAC 815
Query 25888 TACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTG 25946
| | ||| ||||| |||| ||||| || ||||| || |||||||| ||||| || ||||
Sbjct 814 TTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTG 756
Query 25947 AGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995
| || ||||| || || ||| | |||||||||||||| || || || ||
Sbjct 755 AACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGC 707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145635731864784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |