Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq39735 206 8e-49 seq32757 196 1e-45 seq455362 102 2e-17 >seq39735 Length=4112 Score = 206 bits (228), Expect = 8e-49 Identities = 252/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 36222 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCT 36281 |||||||| | || ||||| || |||||||| || || || ||||| || ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 36282 TGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAG 36341 || |||||| | || || | || ||||||| | || ||||| | || | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 36342 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 36401 || || || | | || ||||||||| ||||| | || || ||||| || || ||| Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 36402 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 36461 || ||||| || || || ||||||||||| ||||| || || || || |||| ||| || Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 36462 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 36521 |||||||| || || || || ||||||||||| ||||| || || ||||| |||| ||| Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 36522 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 |||| ||||| | |||| || ||||||||||| |||||||| Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 196 bits (216), Expect = 1e-45 Identities = 239/325 (74%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || ||||||||||| |||||||| || ||| ||||| || | |||||| || | || Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961 Query 36603 CTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACA 36659 ||||||||||| | || |||| || ||||| | ||||| | ||||| | ||| Sbjct 3960 CTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACA 3904 Query 36660 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 36719 || || | ||| || || ||||| |||||||| || || | | || |||||||| ||| Sbjct 3903 ATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATT 3844 Query 36720 GGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTG 36779 ||||| ||||| | ||| || || || | |||| || || || || || || ||| Sbjct 3843 GGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTG 3784 Query 36780 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 36839 ||||| || ||||| | ||| || ||||| |||||||||||||| ||||| || ||||| Sbjct 3783 TTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGT 3724 Query 36840 GCAGCAACAAATGCAATTAAAAATG 36864 ||||||| || ||||| | ||||| Sbjct 3723 GCAGCAATGAAAGCAATAATAAATG 3699 >seq455362 Length=6327 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 |||| || || || || || || |||||||| || ||||| | ||| || ||||| ||| Sbjct 698 GGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCA 757 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 36872 ||||||||||| ||||| || ||||| ||||||| || ||||| | |||| | | | Sbjct 758 CGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTT 817 Query 36873 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913 || || || | | ||||||||| | || | |||||| || Sbjct 818 GCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCC 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149336020349964