Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq39735 196 1e-45 seq32757 150 5e-32 >seq39735 Length=4112 Score = 196 bits (216), Expect = 1e-45 Identities = 252/345 (73%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| | || ||||| || |||||||| || || || ||||| |||||||||||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || |||||| | || || | || ||| | | || ||||| | || | | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 || || || | | |||||||||||| ||| | | || || ||||| ||||| ||| Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 || |||||||| || || ||||||||||| ||||| || || |||||||| | ||| ||| Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGG 5743 || |||||||||||||| || ||||||||||| ||| || ||||| || || | ||| Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 5744 TATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATA 5787 || | || || | | |||| || || ||||| || |||||||| Sbjct 1683 TAGATCAAGAAAATAGCAGTA-GCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 150 bits (166), Expect = 5e-32 Identities = 233/330 (71%), Gaps = 7/330 (2%) Strand=Plus/Minus Query 5760 AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATC 5819 ||||| | || ||||| || ||||||||||| || |||||| || ||||| || | | Sbjct 4024 AGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGAC 3966 Query 5820 TGTAACTAAGTTCCCATTGGCGTCCCA---AGTAAGCTGCGATACCAATAAGGAAGTGGA 5876 | ||||||||||||| | || |||| || ||||| | ||||| | |||||| | Sbjct 3965 GGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTA 3909 Query 5877 AGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCC 5936 || | || | || || || || ||||| | ||||||||| | | || ||||||| Sbjct 3908 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 3849 Query 5937 AGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGA 5996 | || || || ||||| || || || || || | || | || ||| || || || | Sbjct 3848 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 3789 Query 5997 TGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTG 6056 | |||||||| || |||| |||||| | || |||||||| || || || || || || | Sbjct 3788 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCG 3729 Query 6057 GGGGTGCAGCTACGAATGCTAATATAAATG 6086 | |||||||| | ||| || | ||||||| Sbjct 3728 GAGGTGCAGCAATGAAAGCAATAATAAATG 3699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151514902668276