Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq39735 206 8e-49 seq32757 187 8e-43 seq455362 102 2e-17 >seq39735 Length=4112 Score = 206 bits (228), Expect = 8e-49 Identities = 252/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 25702 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCT 25761 |||||||| | || ||||| || |||||||| || || || ||||| || ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 25762 TGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAG 25821 || |||||| | || || | || ||||||| | || ||||| | || | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 25822 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 25881 || || || | | || ||||||||| ||||| | || || ||||| || || ||| Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 25882 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 25941 || ||||| || || || ||||||||||| ||||| || || || || |||| ||| || Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 25942 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 26001 |||||||| || || || || ||||||||||| ||||| || || ||||| |||| ||| Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 26045 |||| ||||| | |||| || ||||||||||| |||||||| Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 187 bits (206), Expect = 8e-43 Identities = 237/325 (73%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || ||||||||||| |||||||| || ||| ||||| || | ||| || || | || Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961 Query 26083 CTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGATGAGAAAGTGGAACACA 26139 ||||||||||| | || |||| || ||||| | || | | ||||| | ||| Sbjct 3960 CTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACA 3904 Query 26140 ATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATT 26199 || || | ||| || |||||||| || ||||| || || | | || |||||||| ||| Sbjct 3903 ATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATT 3844 Query 26200 GGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTG 26259 ||||| ||||| | ||| || || ||| | |||| || || || || || || ||| Sbjct 3843 GGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTG 3784 Query 26260 TTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGC 26319 ||||| || ||||| | ||| || ||||| |||||||||||||| ||||| || ||||| Sbjct 3783 TTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGT 3724 Query 26320 GCAGCAACAAATGCAATTAAAAATG 26344 ||||||| || ||||| | ||||| Sbjct 3723 GCAGCAATGAAAGCAATAATAAATG 3699 >seq455362 Length=6327 Score = 102 bits (112), Expect = 2e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 |||| || || || || || || |||||||| || ||||| | ||| || ||||| ||| Sbjct 698 GGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCA 757 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||||| || ||||| | |||| | | | Sbjct 758 CGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTT 817 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 || || || | | ||||||||| | || | |||||| || Sbjct 818 GCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCC 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150863778943416