Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 230 3e-55
seq32757 168 7e-37
seq455362 91.5 2e-13
>seq39735
Length=4112
Score = 230 bits (254), Expect = 3e-55
Identities = 241/317 (76%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975
||| | |||||| |||| || | |||||||| || ||||||| |||||||| ||
Sbjct 1667 GCTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 1726
Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035
|| ||||||||||| |||| |||| | || |||||||| |||||||||||||| ||||||
Sbjct 1727 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 1786
Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095
|| || || ||| | || || || |||||||| || ||||| || || |||||||||||
Sbjct 1787 CCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCAT 1846
Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155
|||||| | || || ||| | | ||||| ||||| || || | || || || |
Sbjct 1847 GGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 1906
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215
||||| | ||||| ||||| ||||| || || || || || || |||||||| || |||
Sbjct 1907 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAGTTT 1966
Query 163216 GGTCGCTTGATCTTCCA 163232
|| || |||||||||||
Sbjct 1967 GGCCGATTGATCTTCCA 1983
>seq32757
Length=9777
Score = 168 bits (186), Expect = 7e-37
Identities = 254/361 (70%), Gaps = 6/361 (2%)
Strand=Plus/Plus
Query 162569 GCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATA 162628
|||| ||| ||||| | || || || ||||| |||||||| |||||||| || ||||
Sbjct 3678 GCTTCCTCTCAGCATCGCATTCATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATA 3737
Query 162629 TCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTG 162688
| |||||||| | ||||||||| | || || | || || || ||||| || || || |
Sbjct 3738 TTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCG 3797
Query 162689 GTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAG 162748
|||| | | |||| ||| ||||| ||| | ||||| || || || |||||||| |
Sbjct 3798 GTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGG 3857
Query 162749 CAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCC 162808
| || ||||||| ||||| || || ||||| |||| | || | || | ||||||
Sbjct 3858 CTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCT 3917
Query 162809 TTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTA 162865
| | || | ||| | || | |||||| ||||||||||| || ||| | ||||
Sbjct 3918 TACTTGGTGT---AGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 3974
Query 162866 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCNNNNGCTGTGTTCT 162925
|||| |||||||| ||||||||| || || || || | || || ||| ||| ||
Sbjct 3975 TGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTCTGTGCT 4034
Query 162926 T 162926
|
Sbjct 4035 T 4035
>seq455362
Length=6327
Score = 91.5 bits (100), Expect = 2e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600
|| ||||| |||| |||||||||||| || | | ||| | || || || |||
Sbjct 858 GGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATT 799
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
|| |||||||| |||||||| || ||||| |||||||| | ||||||||| | || ||
Sbjct 798 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 739
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
| || || || ||||| || || || ||||| | | |||| ||| ||||| |||
Sbjct 738 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548757146501040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |