Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq39735 230 3e-55 seq32757 168 7e-37 seq455362 91.5 2e-13 >seq39735 Length=4112 Score = 230 bits (254), Expect = 3e-55 Identities = 241/317 (76%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||| | |||||| |||| || | |||||||| || ||||||| |||||||| || Sbjct 1667 GCTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 1726 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| |||| | || |||||||| |||||||||||||| |||||| Sbjct 1727 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 1786 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || |||||||| || ||||| || || ||||||||||| Sbjct 1787 CCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCAT 1846 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 |||||| | || || ||| | | ||||| ||||| || || | || || || | Sbjct 1847 GGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 1906 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||| ||||| || || || || || || |||||||| || ||| Sbjct 1907 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAGTTT 1966 Query 163216 GGTCGCTTGATCTTCCA 163232 || || ||||||||||| Sbjct 1967 GGCCGATTGATCTTCCA 1983 >seq32757 Length=9777 Score = 168 bits (186), Expect = 7e-37 Identities = 254/361 (70%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 162569 GCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATA 162628 |||| ||| ||||| | || || || ||||| |||||||| |||||||| || |||| Sbjct 3678 GCTTCCTCTCAGCATCGCATTCATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATA 3737 Query 162629 TCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTG 162688 | |||||||| | ||||||||| | || || | || || || ||||| || || || | Sbjct 3738 TTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCG 3797 Query 162689 GTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAG 162748 |||| | | |||| ||| ||||| ||| | ||||| || || || |||||||| | Sbjct 3798 GTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGG 3857 Query 162749 CAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCC 162808 | || ||||||| ||||| || || ||||| |||| | || | || | |||||| Sbjct 3858 CTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCT 3917 Query 162809 TTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTA 162865 | | || | ||| | || | |||||| ||||||||||| || ||| | |||| Sbjct 3918 TACTTGGTGT---AGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 3974 Query 162866 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCNNNNGCTGTGTTCT 162925 |||| |||||||| ||||||||| || || || || | || || ||| ||| || Sbjct 3975 TGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTCTGTGCT 4034 Query 162926 T 162926 | Sbjct 4035 T 4035 >seq455362 Length=6327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| |||| |||||||||||| || | | ||| | || || || ||| Sbjct 858 GGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATT 799 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| |||||||| || ||||| |||||||| | ||||||||| | || || Sbjct 798 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 739 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | || || || ||||| || || || ||||| | | |||| ||| ||||| ||| Sbjct 738 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548757146501040