Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 208 9e-49
seq32757 136 4e-27
seq59901 84.2 2e-11
>seq39735
Length=4112
Score = 208 bits (230), Expect = 9e-49
Identities = 253/345 (73%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 163282 TACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGT 163341
|| || || ||||||||||| || | || | ||| || |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 163342 TCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTC 163401
|| ||||||| ||||| || || |||||||| || ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 163402 CAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTC 163461
||||| |||||||||||||| |||||||| || || ||| | || || |||||||| ||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 163462 GGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAG 163521
|| || || || ||| || |||||||| | | || |||||| | || | ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 163522 ACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATAC 163581
|| || |||| ||| || || | ||||||| || |||||||| ||||| || ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 163582 AACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 163626
|| ||||| || || ||||| || || || || ||||||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 136 bits (150), Expect = 4e-27
Identities = 220/313 (70%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 162994 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCA 163053
|| ||| | ||||| || || || || ||||| || || ||||| || || |||| ||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 163054 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 163113
| | || || ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173
| ||||| || || || |||||||| || || ||||||| ||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 163174 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTG 163231
|||| | || | || | |||||| | | || | || ||| |||||||| ||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTG 3947
Query 163232 AATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCAC 163291
| ||||||||| | || | ||||||||||| ||||| ||| ||||| || || |
Sbjct 3948 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 4007
Query 163292 CTGTTGCAGCAGC 163304
|||||||||| ||
Sbjct 4008 CTGTTGCAGCTGC 4020
>seq59901
Length=2371
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122
|||||||| ||||| || || || || || | || | |||||||||||| || |||
Sbjct 2050 TACATTCTCGACGCCGCCGAGGAGGCCGGTCTCGACCTCCCTTACTCTTGTCGCGCCGGT 2109
Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182
| ||||| || || || || || |||| ||| || || || ||| ||| |||
Sbjct 2110 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 2169
Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242
|| || || ||||| ||||||| | || || || || || ||||| || ||||| |
Sbjct 2170 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCTTCC 2229
Query 164243 TCTGAT 164248
||||||
Sbjct 2230 TCTGAT 2235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558802724244080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |