Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq620679 179 7e-40 seq229824 84.2 4e-11 >seq620679 Length=2600 Score = 179 bits (198), Expect = 7e-40 Identities = 565/862 (66%), Gaps = 20/862 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA-ACGAGATGTTCT 47897 |||||| ||||| ||||| ||||||||||| || |||||||||| | || | || || Sbjct 1464 CTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTA-ATCAGCT 1522 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGC 47956 |||| | || ||||| | | ||||| | | || ||| | | ||||| Sbjct 1523 CCATCCAATCAAATGGGTTCTGCACATCATACAGCT-TCCCATACCCCAACGCACCCAGC 1581 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-TGAG 48015 || ||| |||||| |||||||||| | ||| || |||||| || | | || Sbjct 1582 AGCCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAG 1641 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||||| || || | || |||||| ||||||| | || || | || ||| || Sbjct 1642 GCGCACGGT-AACGCGTCGCAGACGAACTCCCTCTCTATGTCAACCGCGTTCCGCACGAT 1700 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| ||||| ||| | | | || | || ||| | || ||||| | ||| || Sbjct 1701 TGACTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAG---GGAGTAGAGAAGGCACGC 1757 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||| | |||||| || || ||| | | |||| |||||| ||||| || Sbjct 1758 GAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGG 1817 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | ||| | || ||| ||||| || || || ||| || ||||||||||| || Sbjct 1818 CATCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCC 1877 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||||| ||||| || || | ||| |||||| | ||| |||||| Sbjct 1878 TTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTC---GATCCA 1934 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || ||||| | ||||| ||| || ||| || || || || | |||||| ||||| Sbjct 1935 TTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAAGAG 1994 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGA 48435 ||| | | ||| | ||||| ||| || ||||||||| || Sbjct 1995 ACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGA 2054 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | ||||| || ||||||||||| ||||||||||| | ||||| | ||||| || Sbjct 2055 GTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGGAC 2114 Query 48496 TTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 || | ||| || ||| || |||||||| ||| || || || || || || |||| Sbjct 2115 CTCCTTCATGAACCT-TCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGA 2173 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA---GCCCT 48611 |||| ||||| || | | ||| || |||| | |||| || | | ||| || || Sbjct 2174 AGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCGCT 2233 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | ||||| | | || || || || || | |||||||| ||||| || || |||| Sbjct 2234 G---GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGT 2290 Query 48672 ACATGCCCCATATGTCCGGATA 48693 |||| |||| || ||||| || Sbjct 2291 ACATCTCCCAGATCTCCGGGTA 2312 >seq229824 Length=340 Score = 84.2 bits (92), Expect = 4e-11 Identities = 216/328 (66%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 48048 TCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGC 48107 ||||||| | || || | || ||| || ||| ||||| ||| | | | || | | Sbjct 339 TCTCTATGTCAACCGCGTTCCGCACGATTGACTTCACGCGCTCCTCGGTGAGCTTCATCC 280 Query 48108 GCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGA 48167 | ||| | || ||||| | || || ||||| | ||| | |||||| || || || Sbjct 279 GGAGGAG---GGAGTAGAGAAGACACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGA 223 Query 48168 TGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTG 48227 | | | |||| ||||| ||||| ||||| | ||| | || ||| ||||| || || | Sbjct 222 TCAACTCGTTCGAGAAAGTCAGACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG 163 Query 48228 CCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTC 48287 | ||| || ||||||||||| || ||||| ||||| || || || ||| Sbjct 162 CGCAGAAGCTCCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCG 103 Query 48288 CGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGC 48347 |||||| || ||| |||||| || ||||| | ||||| ||| || || Sbjct 102 CGAAAGTCTCGGAGCCGTC---GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGC 46 Query 48348 ATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | || || || || | |||||||||||| Sbjct 45 AAGGGATGGTGTCGACGGCCCGGAAGAG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924243951741440