Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq620679 161 2e-34 >seq620679 Length=2600 Score = 161 bits (178), Expect = 2e-34 Identities = 384/571 (67%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || |||||||||||||||||||| | || |||||||||||| ||| | ||| Sbjct 2306 GAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGAT 2247 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | | ||| | | |||| | | ||| || | |||| |||| || ||| Sbjct 2246 CTCGACCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACT 2187 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||||||| || || Sbjct 2186 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGAAGG 2127 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| | ||||| | ||| |||||||| |||||||| || || Sbjct 2126 TTCATGAAGGAGGTCCAGGTCTCGGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCGAT 2068 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| |||| | || || ||| ||||| | |||| | Sbjct 2067 TGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGA 2008 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| | || || ||| | ||| |||| ||| || || || || ||||||| Sbjct 2007 CGAGAAATCCCGTCTCTTTCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCA 1948 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||| |||| |||||| || || | ||| || || | ||||| | || |||| Sbjct 1947 GTGGGCCCTGAAATGGATCGACGGCTCGGAG----ACTTTCGCGGAGCGAATCGTGGCCT 1892 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 | | |||| ||||| || ||||| ||| | || | | ||| || || || ||||| || Sbjct 1891 TCGCCTGC-GTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGC-GCGATATTTTGGCTTAA 1834 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || ||| ||||| || ||| ||| || |||||| | ||| | || || || Sbjct 1833 AAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 1774 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || || ||||| |||||| Sbjct 1773 CCTCCACTGCGACTTCGCGTGCCTTCTCTAC 1743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921576984199040