Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq39735 262 4e-65 seq32757 233 2e-56 >seq39735 Length=4112 Score = 262 bits (290), Expect = 4e-65 Identities = 265/345 (77%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 8638 TACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGT 8697 || || ||||||||||| |||||| ||||| | ||| | |||| || |||||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 8698 TCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTC 8757 || ||||| ||||||||||| || ||||| ||||| ||||||| ||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 8758 CAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTC 8817 || ||||||||||||||||| |||||||| || |||||||| ||||| |||||||| || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 8818 GGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAG 8877 ||||| || || || || ||||||||||| | || || ||| || | | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 8878 ACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTAC 8937 ||||| |||| || ||| || | || |||| ||||||||||| || ||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 8938 AACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAA 8982 || || || ||||||||||| || ||||| || |||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 233 bits (258), Expect = 2e-56 Identities = 250/328 (76%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 8341 TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTT 8400 || |||| || ||| ||||||| ||||| || || || || || || || ||||| ||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 8401 GCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAAC 8460 |||||||| | | ||||| ||||| || || || ||||| || | || | ||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTAC 8520 || || || | ||||| ||||| || |||||||| |||||| ||||||| ||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 8521 AACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT-CTTTGCTTATAT 8579 |||||||| ||||| |||| | ||| | |||||| | ||||| || |||| ||||| Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TATAT 3939 Query 8580 GGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 8639 ||||||||| ||||||||| || ||| || || ||||| |||||||| ||||||||| Sbjct 3940 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATA 3999 Query 8640 CTCTGCTCCTGTTGCCGCTGCTTCTGCT 8667 || ||||||||||| |||||| ||||| Sbjct 4000 TTCAGCTCCTGTTGCAGCTGCTACTGCT 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512438763504000