Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq25161 104 2e-17 seq581596 95.1 1e-14 seq476667 91.5 1e-13 seq36855 86.0 5e-12 seq51887 84.2 2e-11 seq42417 84.2 2e-11 >seq25161 Length=2200 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||| || | || || || || || ||| || |||| || Sbjct 788 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 847 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| ||||||| ||||| ||||| | ||| |||||| Sbjct 848 TGATACAATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGATCA 907 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| || | |||| | || || || || Sbjct 908 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 967 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 968 CATTCAAAAGGAATCAACCTTGCACTTGGT 997 >seq581596 Length=910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || || |||| || Sbjct 646 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 587 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || ||| ||| ||||| ||||| | ||| |||||| Sbjct 586 TGATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 527 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| ||| | |||| | || ||||| || Sbjct 526 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGATTACAA 467 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 466 CATTCAAAAGGAATCAACATTGCACTTGGT 437 >seq476667 Length=529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || ||||| || || || |||| || Sbjct 76 AATGCAAATCTTTGTGAAGACCCTGACTGGGAAAACAATCACATTGGAGGTGGAAAGCTC 135 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || ||| ||| ||||| ||||| | ||| |||||| Sbjct 136 TGATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 195 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| || | |||| | || || || || Sbjct 196 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 255 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 256 CATTCAAAAGGAATCAACATTGCACTTGGT 285 >seq36855 Length=2596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || || |||| || Sbjct 232 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 173 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || ||| ||| ||||| ||||| | ||| |||||| Sbjct 172 TGATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 113 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||| | || ||||| ||||| ||| | |||| | || || || || Sbjct 112 GCAGAGGCTCATCTTTACAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGACTACAA 53 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 52 CATTCAAAAGGAATCAACATTGCACTTGGT 23 >seq51887 Length=16442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 8356 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 8297 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || ||||| ||||| || || ||||| ||| | || ||||| Sbjct 8296 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTAAG 8256 >seq42417 Length=17167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 2786 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 2727 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || ||||| ||||| || || ||||| ||| | || ||||| Sbjct 2726 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTAAG 2686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422159403531114