Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 248 9e-61
seq32757 208 8e-49
seq455362 93.3 5e-14
>seq39735
Length=4112
Score = 248 bits (274), Expect = 9e-61
Identities = 262/345 (76%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 161266 TACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGT 161325
|| || |||||||| || || || | ||| | ||| || |||| || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 161326 TCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTC 161385
|| ||||| | |||||||| || ||||||||||| ||||||| |||| |||| |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 161386 CAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTT 161445
||||| ||||||||||| || |||||||| || || ||||| || || || ||||| |||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 161446 GGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAA 161505
|||||||| || |||||||| ||||| ||||| |||| |||||| || | | |||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 161506 ACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAC 161565
||||| ||||| || || || | ||||||| ||||||||||| ||||| |||||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 161566 AACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAA 161610
|| ||||| || || || || || || || || |||| ||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 208 bits (230), Expect = 8e-49
Identities = 245/328 (75%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 160969 TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTC 161028
|| || ||||| ||| ||| ||| || || || || || || || ||||||||||| ||
Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760
Query 161029 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 161088
|||| || | | || |||||||| || || || ||||| |||||||| |||||
Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820
Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 161148
||||| ||| ||||||| ||||| || |||||||| || | | || |||||| | |||
Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880
Query 161149 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG--GCATCTATGCTTACA 161206
|||||||| |||| | || |||| | |||||| | ||| | | || ||| || |
Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATA 3938
Query 161207 TGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCAT 161266
|||||||||||||||||||| || ||||||||| ||||| ||||||||| || ||||
Sbjct 3939 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998
Query 161267 ACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294
| || |||||||| || || || | |||
Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGCTACTGC 4026
>seq455362
Length=6327
Score = 93.3 bits (102), Expect = 5e-14
Identities = 146/204 (72%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 160903 AACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTGCTCG-CTGCTAC 160961
|| || ||||| |||| ||||| | || ||||||| |||| ||| | | | || ||
Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGAT-CCCTACTTTATTGACCGCAAC 815
Query 160962 CATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTG 161020
| ||| || || ||||| ||| ||| ||| || || || || || || || |||||||
Sbjct 814 T-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTG 756
Query 161021 AACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTT 161080
|||| || |||| || | | || |||||||| || || || ||||| ||||||||
Sbjct 755 AACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTA 696
Query 161081 CTTCTAACGCTATCGGTCTGCACT 161104
||||| ||||| ||| || |||
Sbjct 695 CTTCTGCAGCTATAGGTTTGAACT 672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543461310952560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |