Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq39735 248 9e-61 seq32757 208 8e-49 seq455362 93.3 5e-14 >seq39735 Length=4112 Score = 248 bits (274), Expect = 9e-61 Identities = 262/345 (76%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 161266 TACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGT 161325 || || |||||||| || || || | ||| | ||| || |||| || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 161326 TCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTC 161385 || ||||| | |||||||| || ||||||||||| ||||||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 161386 CAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTT 161445 ||||| ||||||||||| || |||||||| || || ||||| || || || ||||| ||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 161446 GGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAA 161505 |||||||| || |||||||| ||||| ||||| |||| |||||| || | | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 161506 ACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTAC 161565 ||||| ||||| || || || | ||||||| ||||||||||| ||||| ||||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 161566 AACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAA 161610 || ||||| || || || || || || || || |||| |||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 208 bits (230), Expect = 8e-49 Identities = 245/328 (75%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 160969 TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTC 161028 || || ||||| ||| ||| ||| || || || || || || || ||||||||||| || Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 161029 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 161088 |||| || | | || |||||||| || || || ||||| |||||||| ||||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 161089 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 161148 ||||| ||| ||||||| ||||| || |||||||| || | | || |||||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 161149 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG--GCATCTATGCTTACA 161206 |||||||| |||| | || |||| | |||||| | ||| | | || ||| || | Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATA 3938 Query 161207 TGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCAT 161266 |||||||||||||||||||| || ||||||||| ||||| ||||||||| || |||| Sbjct 3939 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998 Query 161267 ACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 | || |||||||| || || || | ||| Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGCTACTGC 4026 >seq455362 Length=6327 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 160903 AACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTGCTCG-CTGCTAC 160961 || || ||||| |||| ||||| | || ||||||| |||| ||| | | | || || Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGAT-CCCTACTTTATTGACCGCAAC 815 Query 160962 CATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTG 161020 | ||| || || ||||| ||| ||| ||| || || || || || || || ||||||| Sbjct 814 T-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTG 756 Query 161021 AACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTT 161080 |||| || |||| || | | || |||||||| || || || ||||| |||||||| Sbjct 755 AACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTA 696 Query 161081 CTTCTAACGCTATCGGTCTGCACT 161104 ||||| ||||| ||| || ||| Sbjct 695 CTTCTGCAGCTATAGGTTTGAACT 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543461310952560