Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq32757 197 4e-46 seq39735 187 7e-43 seq455362 114 4e-21 >seq32757 Length=9777 Score = 197 bits (218), Expect = 4e-46 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 |||||||| || || || ||||| |||||| |||||| ||||||||||| || | || Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||| || || | || | | ||||| | ||||| Sbjct 3960 CTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATT 3901 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 || | ||| || || ||||| |||||||| || || | | || |||||||| |||||| Sbjct 3900 AGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGG 3841 Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644 || ||||| | ||| || || ||| | |||| || || || || || || |||||| Sbjct 3840 TAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTT 3781 Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704 || || ||||| | ||| || ||||| |||||||||||||| || || || ||||| ||| Sbjct 3780 CCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCA 3721 Query 18705 GCAACAAATGCAATCAAAAATG 18726 |||| || ||||| | ||||| Sbjct 3720 GCAATGAAAGCAATAATAAATG 3699 >seq39735 Length=4112 Score = 187 bits (206), Expect = 7e-43 Identities = 250/345 (72%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 18084 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCT 18143 |||||||| | || ||||| || |||||||| || || |||||||| || ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 18144 TGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAG 18203 || || ||| | || || | || ||| ||| || || ||||| || || | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 18204 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 18263 || || || | | || ||||||||| ||||| | || || ||||| || || ||| Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 18264 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAA 18323 || ||||| || || || ||||||||||| ||||| || ||||||||||| | |||||| Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 18324 TTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGA 18383 ||||||||||| || || ||||||||||| ||||| || || ||||| |||| || Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 18384 TA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATA 18427 || | | ||||| || | |||||||| || || || ||||| Sbjct 1683 TAGATCAAGAAAATAGCAGTA-GCAGCTGCAACAGGAGCTGAATA 1640 >seq455362 Length=6327 Score = 114 bits (126), Expect = 4e-21 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 18615 GGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCA 18674 |||| || || || || || || |||||||| || ||||| | ||| || ||||| ||| Sbjct 698 GGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCA 757 Query 18675 CGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCT 18734 ||||||||||| || || || ||||| ||||||| || ||||| | |||| | | || | Sbjct 758 CGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTT 817 Query 18735 GCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 ||||| || | | ||||||||| | || | |||||| || | ||| || || || Sbjct 818 GCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150193597938804