Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 251 9e-62
seq32757 183 4e-41
seq455362 102 1e-16
>seq39735
Length=4112
Score = 251 bits (278), Expect = 9e-62
Identities = 265/346 (77%), Gaps = 2/346 (1%)
Strand=Plus/Minus
Query 103423 TTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTC 103482
|||||||||||| || || || |||||||||||||||||||| || || || ||||||||
Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925
Query 103483 TTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCG 103541
||| ||||| ||||||| | || ||||||| |||| || || || | || | | |
Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865
Query 103542 AGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAA 103601
|| | || || | ||||| |||||||||||||| || ||||| || || || ||||| |
Sbjct 1864 AG-AGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCA 1806
Query 103602 CGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGT 103661
| || |||||||| || |||||||| || ||||| || || |||||||| || | ||||
Sbjct 1805 CACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGA 1746
Query 103662 AGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGG 103721
||||||| || || || || || | ||||||| | || || || |||||||||| |
Sbjct 1745 AGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTG 1686
Query 103722 GGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTA 103767
|||||| |||||| | || | ||||| ||||||||||| || ||
Sbjct 1685 GGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640
>seq32757
Length=9777
Score = 183 bits (202), Expect = 4e-41
Identities = 234/316 (74%), Gaps = 6/316 (2%)
Strand=Plus/Minus
Query 103745 GCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804
||||| ||||||||||| || ||||| ||| ||||| |||||||| ||||||||| |
Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961
Query 103805 GACAATTCCCACTCACGTCCCATATATGCATAGATGC--CAATGAGGAAGTGGAATACTA 103862
| |||||||||||| |||||||| ||| || | | ||| | |||||| | || |
Sbjct 3960 CTAAGTTCCCACTCACGACCCATATA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAA 3903
Query 103863 CAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGG 103922
|| | |||| |||||||| || | ||| ||||||| ||| || |||||||| || |
Sbjct 3902 TTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTG 3843
Query 103923 GATAGAAGTGAAGACCAATTGC-GTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTG 103981
| || ||||| | ||| || || | | || ||||| || ||||| || || || |||
Sbjct 3842 GGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGAT-AATGGCACCGGAAATAATATTG 3784
Query 103982 TTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGT 104041
|| ||||| | | || |||| || ||||||||||| || || ||||| || ||||||
Sbjct 3783 TTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGT 3724
Query 104042 GCTGCTACGAAAGCAA 104057
|| || | ||||||||
Sbjct 3723 GCAGCAATGAAAGCAA 3708
>seq455362
Length=6327
Score = 102 bits (112), Expect = 1e-16
Identities = 125/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 103964 GCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCG 104023
||||| || || || ||||| ||||| | | || |||| || ||||||||||| ||
Sbjct 707 GCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCA 766
Query 104024 TCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAA 104082
|| ||||| || |||||||| || | |||||||| || || |||| ||||| | |||
Sbjct 767 TCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCAA 825
Query 104083 CAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130
| ||| |||||||||| |||| ||||| |||| || ||||| ||
Sbjct 826 TAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628556625323280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |