Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq39735 251 9e-62 seq32757 183 4e-41 seq455362 102 1e-16 >seq39735 Length=4112 Score = 251 bits (278), Expect = 9e-62 Identities = 265/346 (77%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 103423 TTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTC 103482 |||||||||||| || || || |||||||||||||||||||| || || || |||||||| Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925 Query 103483 TTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCG 103541 ||| ||||| ||||||| | || ||||||| |||| || || || | || | | | Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865 Query 103542 AGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAA 103601 || | || || | ||||| |||||||||||||| || ||||| || || || ||||| | Sbjct 1864 AG-AGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCA 1806 Query 103602 CGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGT 103661 | || |||||||| || |||||||| || ||||| || || |||||||| || | |||| Sbjct 1805 CACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGA 1746 Query 103662 AGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGG 103721 ||||||| || || || || || | ||||||| | || || || |||||||||| | Sbjct 1745 AGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTG 1686 Query 103722 GGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTA 103767 |||||| |||||| | || | ||||| ||||||||||| || || Sbjct 1685 GGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 183 bits (202), Expect = 4e-41 Identities = 234/316 (74%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 103745 GCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804 ||||| ||||||||||| || ||||| ||| ||||| |||||||| ||||||||| | Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961 Query 103805 GACAATTCCCACTCACGTCCCATATATGCATAGATGC--CAATGAGGAAGTGGAATACTA 103862 | |||||||||||| |||||||| ||| || | | ||| | |||||| | || | Sbjct 3960 CTAAGTTCCCACTCACGACCCATATA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAA 3903 Query 103863 CAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGG 103922 || | |||| |||||||| || | ||| ||||||| ||| || |||||||| || | Sbjct 3902 TTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTG 3843 Query 103923 GATAGAAGTGAAGACCAATTGC-GTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTG 103981 | || ||||| | ||| || || | | || ||||| || ||||| || || || ||| Sbjct 3842 GGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGAT-AATGGCACCGGAAATAATATTG 3784 Query 103982 TTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGT 104041 || ||||| | | || |||| || ||||||||||| || || ||||| || |||||| Sbjct 3783 TTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGT 3724 Query 104042 GCTGCTACGAAAGCAA 104057 || || | |||||||| Sbjct 3723 GCAGCAATGAAAGCAA 3708 >seq455362 Length=6327 Score = 102 bits (112), Expect = 1e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 103964 GCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCG 104023 ||||| || || || ||||| ||||| | | || |||| || ||||||||||| || Sbjct 707 GCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCA 766 Query 104024 TCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAA 104082 || ||||| || |||||||| || | |||||||| || || |||| ||||| | ||| Sbjct 767 TCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCAA 825 Query 104083 CAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130 | ||| |||||||||| |||| ||||| |||| || ||||| || Sbjct 826 TAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACGCTT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628556625323280