Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq39735 187 7e-43 seq32757 152 1e-32 >seq39735 Length=4112 Score = 187 bits (206), Expect = 7e-43 Identities = 249/346 (72%), Gaps = 0/346 (0%) Strand=Plus/Minus Query 21719 TTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTC 21778 ||||||||| | || ||||| || || ||||| || || ||||| || || |||||||| Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925 Query 21779 TTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGA 21838 |||||| || ||||||| | || || | | ||| || || || | || | Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865 Query 21839 CGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCAC 21898 || || |||| ||| ||||||||| ||| | || |||||||| || ||||| Sbjct 1864 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 1805 Query 21899 ACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTA 21958 ||| ||||||||||| || |||||||| || ||||||||||| ||||| || | |||| | Sbjct 1804 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 1745 Query 21959 GTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGG 22018 |||||| || || || || || | |||||| | |||||||| || || |||| || Sbjct 1744 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 1685 Query 22019 ATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTAC 22064 || | | ||| | |||||| ||||| || |||||||| || ||| Sbjct 1684 GTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATAC 1639 >seq32757 Length=9777 Score = 152 bits (168), Expect = 1e-32 Identities = 238/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 22024 CAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCC 22083 ||| | ||| |||||| ||||| || |||||||| || || |||||| ||||| || | Sbjct 4037 CAAAGCACAGAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGC 3978 Query 22084 TCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACGCCAATG 22142 ||| || || || | |||||||||||||| || ||||| || |||| || |||| Sbjct 3977 GCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA-GCAAGCTACACCAAGT 3919 Query 22143 AGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTA 22202 | |||||| | || | || | | || || |||||||| | ||||||||||| | | Sbjct 3918 AAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAA 3859 Query 22203 GCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCT 22262 || |||||||| |||||||| ||||| | || || || | | || | | ||| Sbjct 3858 GCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCA 3799 Query 22263 CCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCG 22322 || || || || ||||| || || | | || |||| || ||||| || || ||||| Sbjct 3798 CCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCA 3739 Query 22323 ATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA 22360 || || || || ||||| ||| || || |||||||| Sbjct 3738 ATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAA 3701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145121185311480