Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 187 7e-43
seq32757 152 1e-32
>seq39735
Length=4112
Score = 187 bits (206), Expect = 7e-43
Identities = 249/346 (72%), Gaps = 0/346 (0%)
Strand=Plus/Minus
Query 21719 TTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTC 21778
||||||||| | || ||||| || || ||||| || || ||||| || || ||||||||
Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925
Query 21779 TTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGA 21838
|||||| || ||||||| | || || | | ||| || || || | || |
Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865
Query 21839 CGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCAC 21898
|| || |||| ||| ||||||||| ||| | || |||||||| || |||||
Sbjct 1864 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 1805
Query 21899 ACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTA 21958
||| ||||||||||| || |||||||| || ||||||||||| ||||| || | |||| |
Sbjct 1804 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 1745
Query 21959 GTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGG 22018
|||||| || || || || || | |||||| | |||||||| || || |||| ||
Sbjct 1744 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 1685
Query 22019 ATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTAC 22064
|| | | ||| | |||||| ||||| || |||||||| || |||
Sbjct 1684 GTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATAC 1639
>seq32757
Length=9777
Score = 152 bits (168), Expect = 1e-32
Identities = 238/338 (70%), Gaps = 2/338 (1%)
Strand=Plus/Minus
Query 22024 CAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCC 22083
||| | ||| |||||| ||||| || |||||||| || || |||||| ||||| || |
Sbjct 4037 CAAAGCACAGAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGC 3978
Query 22084 TCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACGCCAATG 22142
||| || || || | |||||||||||||| || ||||| || |||| || ||||
Sbjct 3977 GCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA-GCAAGCTACACCAAGT 3919
Query 22143 AGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTA 22202
| |||||| | || | || | | || || |||||||| | ||||||||||| | |
Sbjct 3918 AAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAA 3859
Query 22203 GCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCT 22262
|| |||||||| |||||||| ||||| | || || || | | || | | |||
Sbjct 3858 GCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCA 3799
Query 22263 CCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCG 22322
|| || || || ||||| || || | | || |||| || ||||| || || |||||
Sbjct 3798 CCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCA 3739
Query 22323 ATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA 22360
|| || || || ||||| ||| || || ||||||||
Sbjct 3738 ATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAA 3701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145121185311480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |