Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 206 3e-48
seq32757 154 2e-32
seq430103 113 5e-20
seq12700 104 3e-17
seq619606 98.7 1e-15
seq571077 86.0 7e-12
>seq39735
Length=4112
Score = 206 bits (228), Expect = 3e-48
Identities = 252/344 (73%), Gaps = 0/344 (0%)
Strand=Plus/Minus
Query 124298 TGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCT 124357
|||||||| | || ||||| ||||| || || ||||| || || || |||||||| |||
Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924
Query 124358 TGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAA 124417
|| ||||| | ||||| | || || || | ||||| ||||| ||||| | | |
Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864
Query 124418 GATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACT 124477
|| || || | |||||||||||| || ||||| || || || || | || || ||
Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804
Query 124478 CCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAG 124537
||| |||||| || || ||||| || ||||| ||||| |||||||| || | ||| |||
Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744
Query 124538 TTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGG 124597
||||||||||| ||||| || || |||||||| ||||| || || ||||||| ||||
Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684
Query 124598 TATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATA 124641
|| | ||||| | ||| ||||| | || || ||||||||
Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640
>seq32757
Length=9777
Score = 154 bits (170), Expect = 2e-32
Identities = 242/344 (70%), Gaps = 2/344 (1%)
Strand=Plus/Minus
Query 124619 GCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTAT 124678
||||| | || || |||||||| |||||| |||||||| ||||| || | | | |
Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961
Query 124679 GATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACC 124738
|||||||||| | ||||| || | | ||||| | |||||| | || |
Sbjct 3960 CTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATT 3901
Query 124739 AACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGG 124798
| || |||||| ||||| || || |||||||||||||||| || |||||||| ||||||
Sbjct 3900 AGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGG 3841
Query 124799 TAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTA 124858
|| ||||| | || ||||| || | || | || ||||| || || || |||||
Sbjct 3840 TAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTT 3781
Query 124859 CCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCT 124918
|| || | ||||| || | || ||||| | || || || ||||| || ||||||||
Sbjct 3780 CCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCA 3721
Query 124919 GCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGC 124961
||||| || |||| || || |||| | ||||| ||| ||||
Sbjct 3720 GCAATGAAAGCAATAATAAATGAATGC-GATGCTGAGAGGAAGC 3678
>seq430103
Length=1767
Score = 113 bits (124), Expect = 5e-20
Identities = 173/243 (71%), Gaps = 8/243 (3%)
Strand=Plus/Minus
Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376
|| || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || ||
Sbjct 413 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 354
Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432
| || | | |||||| || || || | || |||| || ||| | ||||||
Sbjct 353 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTTAC--ACCAATAATTCT 298
Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492
||||| ||| | ||||| |||| | | ||| || | |||||| ||||||||||||||
Sbjct 297 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGGAATGCTGCATGAGGACCTCC 238
Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552
|| ||||| || | ||||||||| ||| ||| || ||||||| ||| ||||
Sbjct 237 ATACCCCATCGGCACACCAAACCTCTGCGCGGAACCCACCACAATATCCGCCCCCAACTC 178
Query 139553 ACC 139555
|||
Sbjct 177 ACC 175
>seq12700
Length=3267
Score = 104 bits (114), Expect = 3e-17
Identities = 150/208 (72%), Gaps = 8/208 (4%)
Strand=Plus/Minus
Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376
|| || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || ||
Sbjct 2605 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 2546
Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432
| || | | |||||| || || || | || |||| || ||| | ||||||
Sbjct 2545 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTCAC--ACCAATAATTCT 2490
Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492
||||| ||| | ||||| |||| | | ||| || | ||||| ||||||||||||||
Sbjct 2489 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGAAATGCTGCATGAGGACCTCC 2430
Query 139493 GTATCCCATAGGAATACCAAACCTTTGC 139520
|| ||||| || | ||||||||| |||
Sbjct 2429 ATACCCCATTGGCACACCAAACCTCTGC 2402
>seq619606
Length=1000
Score = 98.7 bits (108), Expect = 1e-15
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||||||||||||| | ||||||||| |||||||| |||||||| || |||||||||||
Sbjct 238 ACACCAATAGGACCCATGCCAGGACCACCACCTCCGTGTGGAATGCAAAATGTCTTATGG 179
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299
| || ||||| || ||||| || ||| || ||| ||| ||||| ||||||
Sbjct 178 AGGTTGAGATGGCAGACATCAGCTCCAATCCAACCTGGGCTTGTCAGACCCACCTGT 122
>seq571077
Length=308
Score = 86.0 bits (94), Expect = 7e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 139421 ACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGC 139480
||| | |||||| ||||| ||| | ||||| |||| | | ||| || | |||||| ||
Sbjct 272 ACCAATAATTCTTCCAGGCATCATCCTCTTGTACTCCTGCGATGTGGCCAGGAATGCTGC 213
Query 139481 ATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540
|||||||||||| || ||||| || | ||||||||| ||| ||| || |||||||
Sbjct 212 ATGAGGACCTCCATACCCCATCGGCACACCAAACCTCTGCGCGGAACCCACCACAATATC 153
Query 139541 AAATCCCCACTCACC 139555
||| |||||||
Sbjct 152 CGCCCCCAACTCACC 138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574467983594320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |