Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq39735 206 3e-48 seq32757 154 2e-32 seq430103 113 5e-20 seq12700 104 3e-17 seq619606 98.7 1e-15 seq571077 86.0 7e-12 >seq39735 Length=4112 Score = 206 bits (228), Expect = 3e-48 Identities = 252/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 124298 TGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCT 124357 |||||||| | || ||||| ||||| || || ||||| || || || |||||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 124358 TGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAA 124417 || ||||| | ||||| | || || || | ||||| ||||| ||||| | | | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 124418 GATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACT 124477 || || || | |||||||||||| || ||||| || || || || | || || || Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 124478 CCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAG 124537 ||| |||||| || || ||||| || ||||| ||||| |||||||| || | ||| ||| Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 124538 TTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGG 124597 ||||||||||| ||||| || || |||||||| ||||| || || ||||||| |||| Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 124598 TATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATA 124641 || | ||||| | ||| ||||| | || || |||||||| Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 154 bits (170), Expect = 2e-32 Identities = 242/344 (70%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 124619 GCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTAT 124678 ||||| | || || |||||||| |||||| |||||||| ||||| || | | | | Sbjct 4020 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3961 Query 124679 GATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACC 124738 |||||||||| | ||||| || | | ||||| | |||||| | || | Sbjct 3960 CTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATT 3901 Query 124739 AACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGG 124798 | || |||||| ||||| || || |||||||||||||||| || |||||||| |||||| Sbjct 3900 AGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGG 3841 Query 124799 TAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTA 124858 || ||||| | || ||||| || | || | || ||||| || || || ||||| Sbjct 3840 TAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTT 3781 Query 124859 CCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCT 124918 || || | ||||| || | || ||||| | || || || ||||| || |||||||| Sbjct 3780 CCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCA 3721 Query 124919 GCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGC 124961 ||||| || |||| || || |||| | ||||| ||| |||| Sbjct 3720 GCAATGAAAGCAATAATAAATGAATGC-GATGCTGAGAGGAAGC 3678 >seq430103 Length=1767 Score = 113 bits (124), Expect = 5e-20 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 413 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 354 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | |||||| || || || | || |||| || ||| | |||||| Sbjct 353 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTTAC--ACCAATAATTCT 298 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 ||||| ||| | ||||| |||| | | ||| || | |||||| |||||||||||||| Sbjct 297 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGGAATGCTGCATGAGGACCTCC 238 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552 || ||||| || | ||||||||| ||| ||| || ||||||| ||| |||| Sbjct 237 ATACCCCATCGGCACACCAAACCTCTGCGCGGAACCCACCACAATATCCGCCCCCAACTC 178 Query 139553 ACC 139555 ||| Sbjct 177 ACC 175 >seq12700 Length=3267 Score = 104 bits (114), Expect = 3e-17 Identities = 150/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 2605 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 2546 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | |||||| || || || | || |||| || ||| | |||||| Sbjct 2545 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTCAC--ACCAATAATTCT 2490 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 ||||| ||| | ||||| |||| | | ||| || | ||||| |||||||||||||| Sbjct 2489 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGAAATGCTGCATGAGGACCTCC 2430 Query 139493 GTATCCCATAGGAATACCAAACCTTTGC 139520 || ||||| || | ||||||||| ||| Sbjct 2429 ATACCCCATTGGCACACCAAACCTCTGC 2402 >seq619606 Length=1000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| |||||||| |||||||| || ||||||||||| Sbjct 238 ACACCAATAGGACCCATGCCAGGACCACCACCTCCGTGTGGAATGCAAAATGTCTTATGG 179 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || ||||| || ||||| || ||| || ||| ||| ||||| |||||| Sbjct 178 AGGTTGAGATGGCAGACATCAGCTCCAATCCAACCTGGGCTTGTCAGACCCACCTGT 122 >seq571077 Length=308 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 139421 ACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGC 139480 ||| | |||||| ||||| ||| | ||||| |||| | | ||| || | |||||| || Sbjct 272 ACCAATAATTCTTCCAGGCATCATCCTCTTGTACTCCTGCGATGTGGCCAGGAATGCTGC 213 Query 139481 ATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 |||||||||||| || ||||| || | ||||||||| ||| ||| || ||||||| Sbjct 212 ATGAGGACCTCCATACCCCATCGGCACACCAAACCTCTGCGCGGAACCCACCACAATATC 153 Query 139541 AAATCCCCACTCACC 139555 ||| ||||||| Sbjct 152 CGCCCCCAACTCACC 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574467983594320