Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq39735 230 3e-55 seq32757 185 1e-41 seq59901 109 7e-19 seq455362 107 3e-18 seq439774 105 9e-18 >seq39735 Length=4112 Score = 230 bits (254), Expect = 3e-55 Identities = 258/345 (75%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 26982 TTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTC 27041 |||||||||||| || || || || ||||| || || ||||| || ||||| ||||| || Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925 Query 27042 TTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGA 27101 ||||||||| | ||||| | || || ||| |||| || || || | || | Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865 Query 27102 AGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAAC 27161 ||| || |||| | || ||||||||| ||| || || || || ||||| ||||| || Sbjct 1864 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 1805 Query 27162 ACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTA 27221 ||| |||||||| || |||||||||||||| ||||| || || |||||||||| |||| | Sbjct 1804 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 1745 Query 27222 GTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGG 27281 ||| |||||||||||||| || ||||||||| | || || || |||||||| | || Sbjct 1744 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 1685 Query 27282 ATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATA 27326 |||| | ||| | ||| | ||||| || || ||||| ||||| Sbjct 1684 GTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640 >seq32757 Length=9777 Score = 185 bits (204), Expect = 1e-41 Identities = 240/328 (73%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAA 27357 ||| | ||||| || || ||||| |||||||| ||| ||||| || |||||||| | | Sbjct 4026 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 3967 Query 27358 CGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGC--CGATAAGGAAGTGGA 27415 || | |||||||||||||| |||||||| ||| || | | | | | |||||| | Sbjct 3966 CGGAAACTAAGTTCCCACTCACGACCCATATA-GCA-AGCTACACCAAGTAAGAAGTGTA 3909 Query 27416 AGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCC 27475 || | || | |||| |||||||| || ||||| ||||| | || || ||||||| Sbjct 3908 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 3849 Query 27476 AGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGA 27535 | |||||||| ||||| | ||| || || ||| | |||| || ||||| ||||| | Sbjct 3848 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 3789 Query 27536 TGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGG 27595 | ||||| || || | | || |||| ||| |||||||||||||| |||||||| || | Sbjct 3788 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCG 3729 Query 27596 GTGGTGCTGCGATGAATGCGACAATGAA 27623 | ||||| || ||||| || | ||| || Sbjct 3728 GAGGTGCAGCAATGAAAGCAATAATAAA 3701 >seq59901 Length=2371 Score = 109 bits (120), Expect = 7e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 ||||||| |||||||||| | ||||| || ||||||||||| ||||| || | ||| Sbjct 2249 GTTTCAAGAGTAACATCAGAGGAAGGATAGGCGACACAAGTGAGGACAAAGCCACCATCA 2190 Query 32693 ATTTGATCATCATCCAAGAACGA-CTGATCACTTTGGTCTACTGTACCAGATACAATCTT 32751 || || |||||||| ||||| | ||| ||| ||||| || || ||| |||| ||| Sbjct 2189 ATCTGGTCATCATC-AAGAAAGCTCTGGTCAGACTGGTCGACGGTGCCATCAACAACCTT 2131 Query 32752 ACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTC 32811 || || || || || |||| ||| || ||||||||||| | || | || | || Sbjct 2130 GCCGGCGCAGGAAGAGCAGGAACCGGCGCGACAAGAGTAAGGGAGGTCGAGACCGGCCTC 2071 Query 32812 CTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 ||| || || || || ||||| |||||||| Sbjct 2070 CTCGGCGGCGTCGAGAATGTAGACATCATCAG 2039 >seq455362 Length=6327 Score = 107 bits (118), Expect = 3e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 27508 GAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACG 27567 ||| | |||| || ||||| ||||| || ||||| || || | | || |||| ||| Sbjct 692 GAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACA 751 Query 27568 GGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCA 27626 |||||||||||||| |||||||| || || ||||| || ||||| || | ||| || || Sbjct 752 GGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA 811 Query 27627 GACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACG 27686 || |||||| | || | || |||||||||| |||| ||||| |||| || | ||| Sbjct 812 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACG 870 Query 27687 GTT 27689 || Sbjct 871 CTT 873 >seq439774 Length=2317 Score = 105 bits (116), Expect = 9e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692 ||||||| |||||||||| | ||||| || ||||||||||| ||||| || | ||| Sbjct 1572 GTTTCAAGAGTAACATCAGAGGAAGGATAGGCGACACAAGTGAGGACAAAGCCACCATCA 1513 Query 32693 ATTTGATCATCATCCAAGAACG-ACTGATCACTTTGGTCTACTGTACCAGATACAATCTT 32751 || || ||||||| |||||| | ||| ||| ||||| || || ||| |||| ||| Sbjct 1512 ATCTGGTCATCAT-CAAGAAAGCTCTGGTCAGACTGGTCGACGGTGCCATCAACAACCTT 1454 Query 32752 ACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTC 32811 || || || || || |||| ||| || ||||| ||||| | || | || | || Sbjct 1453 GCCGGCGCAGGAAGAGCAGGAACCGGCGCGACAGGAGTAAGGGAGGTCGAGACCTGCCTC 1394 Query 32812 CTCTGCTGCATCAAGGATGTATTGATCATCAG 32843 ||| || || || || ||||| |||||||| Sbjct 1393 CTCGGCGGCGTCGAGAATGTAGACATCATCAG 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660287189155120