Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 230 3e-55
seq32757 185 1e-41
seq59901 109 7e-19
seq455362 107 3e-18
seq439774 105 9e-18
>seq39735
Length=4112
Score = 230 bits (254), Expect = 3e-55
Identities = 258/345 (75%), Gaps = 0/345 (0%)
Strand=Plus/Minus
Query 26982 TTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTC 27041
|||||||||||| || || || || ||||| || || ||||| || ||||| ||||| ||
Sbjct 1984 TTGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTC 1925
Query 27042 TTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGA 27101
||||||||| | ||||| | || || ||| |||| || || || | || |
Sbjct 1924 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 1865
Query 27102 AGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAAC 27161
||| || |||| | || ||||||||| ||| || || || || ||||| ||||| ||
Sbjct 1864 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 1805
Query 27162 ACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTA 27221
||| |||||||| || |||||||||||||| ||||| || || |||||||||| |||| |
Sbjct 1804 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 1745
Query 27222 GTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGG 27281
||| |||||||||||||| || ||||||||| | || || || |||||||| | ||
Sbjct 1744 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 1685
Query 27282 ATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATA 27326
|||| | ||| | ||| | ||||| || || ||||| |||||
Sbjct 1684 GTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1640
>seq32757
Length=9777
Score = 185 bits (204), Expect = 1e-41
Identities = 240/328 (73%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAA 27357
||| | ||||| || || ||||| |||||||| ||| ||||| || |||||||| | |
Sbjct 4026 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 3967
Query 27358 CGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGC--CGATAAGGAAGTGGA 27415
|| | |||||||||||||| |||||||| ||| || | | | | | |||||| |
Sbjct 3966 CGGAAACTAAGTTCCCACTCACGACCCATATA-GCA-AGCTACACCAAGTAAGAAGTGTA 3909
Query 27416 AGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCC 27475
|| | || | |||| |||||||| || ||||| ||||| | || || |||||||
Sbjct 3908 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 3849
Query 27476 AGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGA 27535
| |||||||| ||||| | ||| || || ||| | |||| || ||||| ||||| |
Sbjct 3848 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 3789
Query 27536 TGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGG 27595
| ||||| || || | | || |||| ||| |||||||||||||| |||||||| || |
Sbjct 3788 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCG 3729
Query 27596 GTGGTGCTGCGATGAATGCGACAATGAA 27623
| ||||| || ||||| || | ||| ||
Sbjct 3728 GAGGTGCAGCAATGAAAGCAATAATAAA 3701
>seq59901
Length=2371
Score = 109 bits (120), Expect = 7e-19
Identities = 153/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692
||||||| |||||||||| | ||||| || ||||||||||| ||||| || | |||
Sbjct 2249 GTTTCAAGAGTAACATCAGAGGAAGGATAGGCGACACAAGTGAGGACAAAGCCACCATCA 2190
Query 32693 ATTTGATCATCATCCAAGAACGA-CTGATCACTTTGGTCTACTGTACCAGATACAATCTT 32751
|| || |||||||| ||||| | ||| ||| ||||| || || ||| |||| |||
Sbjct 2189 ATCTGGTCATCATC-AAGAAAGCTCTGGTCAGACTGGTCGACGGTGCCATCAACAACCTT 2131
Query 32752 ACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTC 32811
|| || || || || |||| ||| || ||||||||||| | || | || | ||
Sbjct 2130 GCCGGCGCAGGAAGAGCAGGAACCGGCGCGACAAGAGTAAGGGAGGTCGAGACCGGCCTC 2071
Query 32812 CTCTGCTGCATCAAGGATGTATTGATCATCAG 32843
||| || || || || ||||| ||||||||
Sbjct 2070 CTCGGCGGCGTCGAGAATGTAGACATCATCAG 2039
>seq455362
Length=6327
Score = 107 bits (118), Expect = 3e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 27508 GAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACG 27567
||| | |||| || ||||| ||||| || ||||| || || | | || |||| |||
Sbjct 692 GAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACA 751
Query 27568 GGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCA 27626
|||||||||||||| |||||||| || || ||||| || ||||| || | ||| || ||
Sbjct 752 GGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA 811
Query 27627 GACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACG 27686
|| |||||| | || | || |||||||||| |||| ||||| |||| || | |||
Sbjct 812 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAGACG 870
Query 27687 GTT 27689
||
Sbjct 871 CTT 873
>seq439774
Length=2317
Score = 105 bits (116), Expect = 9e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 32633 GTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAACCCTTCTTCA 32692
||||||| |||||||||| | ||||| || ||||||||||| ||||| || | |||
Sbjct 1572 GTTTCAAGAGTAACATCAGAGGAAGGATAGGCGACACAAGTGAGGACAAAGCCACCATCA 1513
Query 32693 ATTTGATCATCATCCAAGAACG-ACTGATCACTTTGGTCTACTGTACCAGATACAATCTT 32751
|| || ||||||| |||||| | ||| ||| ||||| || || ||| |||| |||
Sbjct 1512 ATCTGGTCATCAT-CAAGAAAGCTCTGGTCAGACTGGTCGACGGTGCCATCAACAACCTT 1454
Query 32752 ACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACCCCACCTTC 32811
|| || || || || |||| ||| || ||||| ||||| | || | || | ||
Sbjct 1453 GCCGGCGCAGGAAGAGCAGGAACCGGCGCGACAGGAGTAAGGGAGGTCGAGACCTGCCTC 1394
Query 32812 CTCTGCTGCATCAAGGATGTATTGATCATCAG 32843
||| || || || || ||||| ||||||||
Sbjct 1393 CTCGGCGGCGTCGAGAATGTAGACATCATCAG 1362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 660287189155120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |