Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq37849 100 3e-16
seq620679 93.3 5e-14
seq229824 84.2 3e-11
seq21555 82.4 9e-11
>seq37849
Length=6260
Score = 100 bits (110), Expect = 3e-16
Identities = 227/339 (67%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
||||| || |||||||| || || || || || || |||||| | ||| || ||
Sbjct 3651 CCAGGAACTGGAAAGACTCTGCTAGCGAAGGCAATTGCTGGTGAAGCTGGTGTTCCTTTT 3710
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| | | | ||||| || |||||||||||||| ||||| | ||
Sbjct 3711 TTCTCTATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTC 3770
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|| ||||| ||| | | || |||||| ||| || ||||| || ||||||| |||
Sbjct 3771 CGTGATCTTTTTAAGAAGGCTAAGGAAAATGCACCTTGCATTGTATTTGTTGATGAAATT 3830
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551
||||| || || ||| | | |||| |||| || ||||| || ||||||
Sbjct 3831 GATGCTGTTGGACGTCAAAGAGGAACTGGAATTGGT---GGAGGCAATGATGAAAGAGAA 3887
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATT 175608
|| || ||||||| || | || || |||||||| ||||| | | ||||| ||||
Sbjct 3888 CAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATT 3947
Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
|||| |||| || ||||| | | ||||| ||||||
Sbjct 3948 GTGG---TTGCAGCAACTAACAGGGCAGATATTCTTGAT 3983
>seq620679
Length=2600
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/198 (71%), Gaps = 7/198 (4%)
Strand=Plus/Minus
Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAG 65079
||| |||||| | ||||| |||||||| | ||| | |||| | ||||| |||
Sbjct 1959 GAAAAAGGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCGGAGACTTTCGCGGAG 1905
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
|| | | || || || || ||||| || ||||||||||| ||| |||||||| ||
Sbjct 1904 CGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATA 1845
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| |||| | || ||||| || | ||||| || || |||||| || || | || ||
Sbjct 1844 TTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCG 1785
Query 65200 CGAGATGAGGGTCTCCAC 65217
|||||||| || ||||||
Sbjct 1784 CGAGATGAAGGCCTCCAC 1767
>seq229824
Length=340
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/198 (70%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAG 65079
||| |||||| | ||||| |||||||| | ||| | ||| | ||||| |||
Sbjct 53 GAAAAAGGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCCGAGACTTTCGCGGAG 107
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
|| | | || || || || ||||| || ||||||||||| ||| |||||||| ||
Sbjct 108 CGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATA 167
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| |||| | || ||||| || | ||||| || || ||||| || || | || ||
Sbjct 168 TTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAGTTGATCTCG 227
Query 65200 CGAGATGAGGGTCTCCAC 65217
|||||||| || ||||||
Sbjct 228 CGAGATGAAGGCCTCCAC 245
>seq21555
Length=2254
Score = 82.4 bits (90), Expect = 9e-11
Identities = 191/282 (68%), Gaps = 12/282 (4%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC---CCA 175371
|| ||||| ||||||||||| || || || ||| | || ||||| | || | ||
Sbjct 41 CCCGGTACCGGAAAGACCCTGCTGGCGCGTGCCGTTGCTGGTGAGGC---TGGCACGCCG 97
Query 175372 TTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431
||| || ||| | || | | ||||||||| ||||||| || ||||| || ||
Sbjct 98 TTCTTCTCGTGTGCCGCTTCGGAGTTTGTGGAGCTGTTTGTGGGAGTGGGAGCGTCGAGA 157
Query 175432 GTTCGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490
|| | || | ||||| | ||| | ||| | || || ||| | || ||||||||
Sbjct 158 GTGAGGGACTTGTTTGAGAAGGCCAAGTCGAAAGC-GCCCTGCATTATGTTTATTGATGA 216
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548
||||||||| || || | ||| | | || || ||| | | | |||||| |||||
Sbjct 217 GATTGATGCCGTTGGGAGGCAGAGGGGGGCGGGGATGGGAGG--TGGAAATGATGAGAGG 274
Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
|| || || |||||||| || | || |||||||| || |||
Sbjct 275 GAGCAGACTATTAATCAGTTATTGACGGAGATGGACGGGTTT 316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591901696422080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |