Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq37849 100 3e-16 seq620679 93.3 5e-14 seq229824 84.2 3e-11 seq21555 82.4 9e-11 >seq37849 Length=6260 Score = 100 bits (110), Expect = 3e-16 Identities = 227/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || |||||| | ||| || || Sbjct 3651 CCAGGAACTGGAAAGACTCTGCTAGCGAAGGCAATTGCTGGTGAAGCTGGTGTTCCTTTT 3710 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | || Sbjct 3711 TTCTCTATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTC 3770 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | || |||||| ||| || ||||| || ||||||| ||| Sbjct 3771 CGTGATCTTTTTAAGAAGGCTAAGGAAAATGCACCTTGCATTGTATTTGTTGATGAAATT 3830 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || ||| | | |||| |||| || ||||| || |||||| Sbjct 3831 GATGCTGTTGGACGTCAAAGAGGAACTGGAATTGGT---GGAGGCAATGATGAAAGAGAA 3887 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATT 175608 || || ||||||| || | || || |||||||| ||||| | | ||||| |||| Sbjct 3888 CAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATT 3947 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||| |||| || ||||| | | ||||| |||||| Sbjct 3948 GTGG---TTGCAGCAACTAACAGGGCAGATATTCTTGAT 3983 >seq620679 Length=2600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAG 65079 ||| |||||| | ||||| |||||||| | ||| | |||| | ||||| ||| Sbjct 1959 GAAAAAGGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCGGAGACTTTCGCGGAG 1905 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || | | || || || || ||||| || ||||||||||| ||| |||||||| || Sbjct 1904 CGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATA 1845 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||| | || ||||| || | ||||| || || |||||| || || | || || Sbjct 1844 TTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCG 1785 Query 65200 CGAGATGAGGGTCTCCAC 65217 |||||||| || |||||| Sbjct 1784 CGAGATGAAGGCCTCCAC 1767 >seq229824 Length=340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAG 65079 ||| |||||| | ||||| |||||||| | ||| | ||| | ||||| ||| Sbjct 53 GAAAAAGGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCCGAGACTTTCGCGGAG 107 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || | | || || || || ||||| || ||||||||||| ||| |||||||| || Sbjct 108 CGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCGCGATA 167 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||| | || ||||| || | ||||| || || ||||| || || | || || Sbjct 168 TTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAGTTGATCTCG 227 Query 65200 CGAGATGAGGGTCTCCAC 65217 |||||||| || |||||| Sbjct 228 CGAGATGAAGGCCTCCAC 245 >seq21555 Length=2254 Score = 82.4 bits (90), Expect = 9e-11 Identities = 191/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC---CCA 175371 || ||||| ||||||||||| || || || ||| | || ||||| | || | || Sbjct 41 CCCGGTACCGGAAAGACCCTGCTGGCGCGTGCCGTTGCTGGTGAGGC---TGGCACGCCG 97 Query 175372 TTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 ||| || ||| | || | | ||||||||| ||||||| || ||||| || || Sbjct 98 TTCTTCTCGTGTGCCGCTTCGGAGTTTGTGGAGCTGTTTGTGGGAGTGGGAGCGTCGAGA 157 Query 175432 GTTCGCGATCTCTTTGAAATCGCC-CGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 || | || | ||||| | ||| | ||| | || || ||| | || |||||||| Sbjct 158 GTGAGGGACTTGTTTGAGAAGGCCAAGTCGAAAGC-GCCCTGCATTATGTTTATTGATGA 216 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| || || | ||| | | || || ||| | | | |||||| ||||| Sbjct 217 GATTGATGCCGTTGGGAGGCAGAGGGGGGCGGGGATGGGAGG--TGGAAATGATGAGAGG 274 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || |||||||| || | || |||||||| || ||| Sbjct 275 GAGCAGACTATTAATCAGTTATTGACGGAGATGGACGGGTTT 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591901696422080