Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 235 7e-57
seq32757 132 6e-26
seq455362 87.8 2e-12
>seq39735
Length=4112
Score = 235 bits (260), Expect = 7e-57
Identities = 255/338 (75%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 8140 TGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCT 8199
|||||||| |||| ||||| || |||||||| || || ||||||||||| ||||| |||
Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924
Query 8200 TGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAA 8259
||||| || | ||||| | || ||| || | ||| || || || ||||| | | |
Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864
Query 8260 GATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACC 8319
|| || || |||||||| |||||||||||||| || || || || || | ||| || ||
Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804
Query 8320 CCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAG 8379
||| ||| || || || |||||||| ||||| ||||| ||||||||||| | |||||||
Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744
Query 8380 TTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGA 8439
|| || |||||||| || ||||||||||| || ||||| || || ||||||| |||
Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684
Query 8440 TATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGC 8477
|| | ||||| | || |||||| | || |||||
Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGC 1646
>seq32757
Length=9777
Score = 132 bits (146), Expect = 6e-26
Identities = 222/321 (69%), Gaps = 0/321 (0%)
Strand=Plus/Minus
Query 8460 AGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTA 8519
|||||| | || ||||| |||||| ||| ||||| || | |||||| | ||| |
Sbjct 4021 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAA 3962
Query 8520 TGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAAC 8579
| ||||||| | |||||| || || | |||| | |||||| | | ||
Sbjct 3961 ACTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAAT 3902
Query 8580 CAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGG 8639
| || ||| || || ||||| || ||||| ||||| | | || |||||||| || ||
Sbjct 3901 TAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGG 3842
Query 8640 ATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTT 8699
|| ||||| || || ||||| |||| || | | ||||| || || || |||||
Sbjct 3841 GTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTT 3782
Query 8700 TCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGC 8759
||| || | || || || | |||||||||||||||||| || ||||| || || || ||
Sbjct 3781 TCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGC 3722
Query 8760 AGCAATAAATGCCACGATAAA 8780
|||||| || || | |||||
Sbjct 3721 AGCAATGAAAGCAATAATAAA 3701
>seq455362
Length=6327
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739
||||| || || || |||||||| || | || || || | ||||||||||||||||||
Sbjct 707 GCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCA 766
Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799
|| ||||| || || || |||||||| || || | ||||| || || || | ||
Sbjct 767 TCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAAT 826
Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840
|| ||| ||||| | ||| | |||||| || | |||||
Sbjct 827 AAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAG 867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611043538461520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |