Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq39735 235 7e-57 seq32757 132 6e-26 seq455362 87.8 2e-12 >seq39735 Length=4112 Score = 235 bits (260), Expect = 7e-57 Identities = 255/338 (75%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 8140 TGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCT 8199 |||||||| |||| ||||| || |||||||| || || ||||||||||| ||||| ||| Sbjct 1983 TGGAAGATCAATCGGCCAAACTAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCT 1924 Query 8200 TGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAA 8259 ||||| || | ||||| | || ||| || | ||| || || || ||||| | | | Sbjct 1923 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1864 Query 8260 GATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACC 8319 || || || |||||||| |||||||||||||| || || || || || | ||| || || Sbjct 1863 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 1804 Query 8320 CCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAG 8379 ||| ||| || || || |||||||| ||||| ||||| ||||||||||| | ||||||| Sbjct 1803 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 1744 Query 8380 TTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGA 8439 || || |||||||| || ||||||||||| || ||||| || || ||||||| ||| Sbjct 1743 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 1684 Query 8440 TATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGC 8477 || | ||||| | || |||||| | || ||||| Sbjct 1683 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGC 1646 >seq32757 Length=9777 Score = 132 bits (146), Expect = 6e-26 Identities = 222/321 (69%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 8460 AGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTA 8519 |||||| | || ||||| |||||| ||| ||||| || | |||||| | ||| | Sbjct 4021 AGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAA 3962 Query 8520 TGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAAC 8579 | ||||||| | |||||| || || | |||| | |||||| | | || Sbjct 3961 ACTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAAT 3902 Query 8580 CAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGG 8639 | || ||| || || ||||| || ||||| ||||| | | || |||||||| || || Sbjct 3901 TAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGG 3842 Query 8640 ATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTT 8699 || ||||| || || ||||| |||| || | | ||||| || || || ||||| Sbjct 3841 GTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTT 3782 Query 8700 TCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGC 8759 ||| || | || || || | |||||||||||||||||| || ||||| || || || || Sbjct 3781 TCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGC 3722 Query 8760 AGCAATAAATGCCACGATAAA 8780 |||||| || || | ||||| Sbjct 3721 AGCAATGAAAGCAATAATAAA 3701 >seq455362 Length=6327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 ||||| || || || |||||||| || | || || || | |||||||||||||||||| Sbjct 707 GCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCA 766 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799 || ||||| || || || |||||||| || || | ||||| || || || | || Sbjct 767 TCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAAT 826 Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 || ||| ||||| | ||| | |||||| || | ||||| Sbjct 827 AAAGTAGGGATCATCAAAACACAAAACCATCCAATGTAAAG 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611043538461520