Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq39735 226 3e-54 seq32757 167 3e-36 >seq39735 Length=4112 Score = 226 bits (250), Expect = 3e-54 Identities = 257/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 166159 TACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGT 166218 || ||||| || || || ||||| | ||| | ||| | | || || | |||||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 166219 AGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTC 166278 || || ||||| | ||||| || |||||||| || || ||||||| |||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 166279 CAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTT 166338 |||||||||||||| || || ||||| || || || ||||| || || ||||| |||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 166339 GGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAG 166398 || || | || ||||||||||| || |||||| || ||| | | | || || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 166399 ACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATAC 166458 || || |||| ||||| || | ||||||| ||||| ||||| |||||||| || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 166459 AACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAA 166503 || |||||||||||||||||||| || || || |||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 165871 GCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCT 165930 || ||||| ||||| || || || || || || || || |||||||| || |||| ||| Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769 Query 165931 CTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 165990 | | || || ||||| || || || ||||| || | || |||| || || ||| Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829 Query 165991 CTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGT 166050 | ||||| || || || |||||||| || || |||| |||||| | || |||||||| Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889 Query 166051 CCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAG 166110 |||| | || |||| | |||||| | |||| | | ||| |||||||||||| Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAG 3949 Query 166111 TGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCA 166170 |||||||| || |||||| |||||||| || ||||| |||||| || ||||| || Sbjct 3950 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCT 4009 Query 166171 GTCGCTGCTGCGAGTGC 166187 || || ||||| | ||| Sbjct 4010 GTTGCAGCTGCTACTGC 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856472930400