Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq39735 226 3e-54
seq32757 167 3e-36
>seq39735
Length=4112
Score = 226 bits (250), Expect = 3e-54
Identities = 257/345 (74%), Gaps = 0/345 (0%)
Strand=Plus/Plus
Query 166159 TACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGT 166218
|| ||||| || || || ||||| | ||| | ||| | | || || | ||||||||
Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699
Query 166219 AGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTC 166278
|| || ||||| | ||||| || |||||||| || || ||||||| |||| | || |||
Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759
Query 166279 CAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTT 166338
|||||||||||||| || || ||||| || || || ||||| || || ||||| ||||||
Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819
Query 166339 GGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAG 166398
|| || | || ||||||||||| || |||||| || ||| | | | || ||
Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879
Query 166399 ACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATAC 166458
|| || |||| ||||| || | ||||||| ||||| ||||| |||||||| ||
Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939
Query 166459 AACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAA 166503
|| |||||||||||||||||||| || || || ||||||||||||
Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984
>seq32757
Length=9777
Score = 167 bits (184), Expect = 3e-36
Identities = 227/317 (72%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 165871 GCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCT 165930
|| ||||| ||||| || || || || || || || || |||||||| || |||| |||
Sbjct 3710 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 3769
Query 165931 CTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 165990
| | || || ||||| || || || ||||| || | || |||| || || |||
Sbjct 3770 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 3829
Query 165991 CTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGT 166050
| ||||| || || || |||||||| || || |||| |||||| | || ||||||||
Sbjct 3830 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 3889
Query 166051 CCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAG 166110
|||| | || |||| | |||||| | |||| | | ||| ||||||||||||
Sbjct 3890 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAG 3949
Query 166111 TGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCA 166170
|||||||| || |||||| |||||||| || ||||| |||||| || ||||| ||
Sbjct 3950 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCT 4009
Query 166171 GTCGCTGCTGCGAGTGC 166187
|| || ||||| | |||
Sbjct 4010 GTTGCAGCTGCTACTGC 4026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556856472930400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |