Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq39735 187 7e-43 seq32757 152 1e-32 >seq39735 Length=4112 Score = 187 bits (206), Expect = 7e-43 Identities = 249/346 (72%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 41623 GTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGG 41682 ||| || |||||||| || ||||| |||||| | ||| | | || || |||| || || Sbjct 1639 GTATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGG 1698 Query 41683 CTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTT 41742 |||||||| | |||||| | || || || || || ||||||| |||| | || || Sbjct 1699 AAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATT 1758 Query 41743 CCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATT 41802 ||| ||||||||||| || |||||||| || ||||||||||| |||||||| || ||||| Sbjct 1759 CCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATT 1818 Query 41803 TGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGA 41862 ||| || | ||| ||||||||| ||| |||| || || | || | || Sbjct 1819 TGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGA 1878 Query 41863 GACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTA 41922 || || ||| | | || || | ||||||| || |||||||||||||| || || Sbjct 1879 AACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTA 1938 Query 41923 CAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAA 41968 ||||| || || ||||| || || ||||| || | ||||||||| Sbjct 1939 TAATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 152 bits (168), Expect = 1e-32 Identities = 238/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 41327 TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTC 41386 |||||||| || || ||| ||||| || || || || ||||| || || ||||| || Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 41387 GCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAAT 41446 |||| || | | || || ||||| || || || || ||| | | || | | Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || || || | ||||| |||||||| |||||||| ||| | ||||||||||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACAT 41565 ||||| || || | | || | || | |||||| | |||| || |||| || || Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TATAT 3939 Query 41566 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTA 41625 ||| || |||||||||||||| | || || || ||| | || ||||| |||||| || Sbjct 3940 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATA 3999 Query 41626 CTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTG 41663 || |||||||| || ||||| |||||| ||| | ||| Sbjct 4000 TTCAGCTCCTGTTGCAGCTGCTACTGCTCTGTGCTTTG 4037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145127537738064