Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq39735 212 2e-50 seq32757 165 2e-36 seq455362 127 6e-25 >seq39735 Length=4112 Score = 212 bits (234), Expect = 2e-50 Identities = 254/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 42679 TACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGT 42738 || || || ||||| || || || ||||| | ||| | |||| ||| |||| ||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 42739 TCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTC 42798 ||||| || || |||||||| || || || ||||| |||||||||||| | || ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 42799 CAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTT 42858 || ||||| || ||||| |||||||| || || || ||||| ||||| || || |||||| Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 42859 GGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAA 42918 || || || | ||| |||||||||||| | | || |||||| | | | | ||| Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 42919 ACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTAT 42978 || || ||||| ||| ||| | || |||| |||||||||||||| || || ||| Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 42979 AACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAA 43023 || || || || || |||||||| ||||| || | ||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq32757 Length=9777 Score = 165 bits (182), Expect = 2e-36 Identities = 232/326 (71%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| | |||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 ||||| ||| | || || || ||||| || || || |||||| | | |||| | Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 || || || | || || || | || |||||||| | | |||| |||||| | ||| Sbjct 3821 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATAC 3880 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTG 42621 || || || |||||| |||| | || | |||||| | | ||| | | || || Sbjct 3881 AACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG 3940 Query 42622 GGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTAC 42681 || || || ||||||||| | ||| || || ||| | || ||||| |||||| || Sbjct 3941 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 4000 Query 42682 TCTGCCCCTGTGGCTGCAGCGACTGC 42707 || || ||||| || || || ||||| Sbjct 4001 TCAGCTCCTGTTGCAGCTGCTACTGC 4026 >seq455362 Length=6327 Score = 127 bits (140), Expect = 6e-25 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACC 42375 || |||||||| |||| |||||| |||| ||||||| || | | | | || || Sbjct 873 AAGCGTCTTTACATTGGATGGTTTTGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 814 Query 42376 ACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGA 42434 | ||| |||||| | |||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 813 TC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 755 Query 42435 ACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483 |||||| ||||| ||| | || || || ||||| || || || |||||| Sbjct 754 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCC 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142465870999368